3D-Printed Modular Microfluidic Device Enabling Preconcentrating Bacteria and Purifying Bacterial DNA in Blood for Improving the Sensitivity of Molecular Diagnostics Article Swipe
YOU?
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· 2020
· Open Access
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· DOI: https://doi.org/10.3390/s20041202
Molecular diagnostics for sepsis is still a challenge due to the presence of compounds that interfere with gene amplification and bacteria at concentrations lower than the limit of detection (LOD). Here, we report on the development of a 3D printed modular microfluidic device (3DpmμFD) that preconcentrates bacteria of interest in whole blood and purifies their genomic DNA (gDNA). It is composed of a W-shaped microchannel and a conical microchamber. Bacteria of interest are magnetically captured from blood in the device with antibody conjugated magnetic nanoparticles (Ab-MNPs) at 5 mL/min in the W-shaped microchannel, while purified gDNA of the preconcentrated bacteria is obtained with magnetic silica beads (MSBs) at 2 mL/min in the conical microchamber. The conical microchamber was designed to be connected to the microchannel after the capturing process using a 3D-printed rotary valve to minimize the exposure of the MSBs to interfering compounds in blood. The pretreatment process of spiked blood (2.5 mL) can be effectively completed within about 50 min. With the 3DpmμFD, the LOD for the target microorganism Escherichia coli O157:H7 measured by both polymerase chain reaction (PCR) with electrophoresis and quantitative PCR was 10 colony forming unit (CFU) per mL of whole blood. The results suggest that our method lowers the LOD of molecular diagnostics for pathogens in blood by providing bacterial gDNA at high purity and concentration.
Related Topics
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/s20041202
- https://www.mdpi.com/1424-8220/20/4/1202/pdf?version=1582335697
- OA Status
- gold
- Cited By
- 23
- References
- 28
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3006903143
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W3006903143Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3390/s20041202Digital Object Identifier
- Title
-
3D-Printed Modular Microfluidic Device Enabling Preconcentrating Bacteria and Purifying Bacterial DNA in Blood for Improving the Sensitivity of Molecular DiagnosticsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2020Year of publication
- Publication date
-
2020-02-21Full publication date if available
- Authors
-
Abdurhaman Teyib Abafogi, Jaewon Kim, Jinyeop Lee, Merem Omer Mohammed, Danny van Noort, Sungsu ParkList of authors in order
- Landing page
-
https://doi.org/10.3390/s20041202Publisher landing page
- PDF URL
-
https://www.mdpi.com/1424-8220/20/4/1202/pdf?version=1582335697Direct link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.mdpi.com/1424-8220/20/4/1202/pdf?version=1582335697Direct OA link when available
- Concepts
-
Bacteria, Microchannel, Microfluidics, genomic DNA, Detection limit, Chromatography, Polymerase chain reaction, Chemistry, Molecular diagnostics, Whole blood, Materials science, Microbiology, Molecular biology, Nanotechnology, DNA, Biology, Biochemistry, Gene, Bioinformatics, Genetics, ImmunologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
23Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 7, 2024: 2, 2023: 5, 2022: 5, 2021: 4Per-year citation counts (last 5 years)
- References (count)
-
28Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.microchannel | 64, 124 |
| abstract_inverted_index.microfluidic | 41 |
| abstract_inverted_index.pretreatment | 147 |
| abstract_inverted_index.quantitative | 184 |
| abstract_inverted_index.amplification | 18 |
| abstract_inverted_index.microchamber. | 68, 113 |
| abstract_inverted_index.microchannel, | 92 |
| abstract_inverted_index.microorganism | 170 |
| abstract_inverted_index.nanoparticles | 84 |
| abstract_inverted_index.concentration. | 221 |
| abstract_inverted_index.concentrations | 22 |
| abstract_inverted_index.electrophoresis | 182 |
| abstract_inverted_index.preconcentrated | 98 |
| abstract_inverted_index.preconcentrates | 45 |
| cited_by_percentile_year.max | 99 |
| cited_by_percentile_year.min | 94 |
| corresponding_author_ids | https://openalex.org/A5087157024 |
| countries_distinct_count | 4 |
| institutions_distinct_count | 6 |
| corresponding_institution_ids | https://openalex.org/I848706 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/6 |
| sustainable_development_goals[0].score | 0.41999998688697815 |
| sustainable_development_goals[0].display_name | Clean water and sanitation |
| citation_normalized_percentile.value | 0.7650906 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |