A centrifuge-based method for identifying novel genetic traits that affect root-substrate adhesion inArabidopsis thaliana Article Swipe

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Bethany M. Eldridge , Emily R. Larson , Laura Weldon , Kevin M. Smyth , Annabelle N Sellin , Isaac V. Chenchiah , Tanniemola B. Liverpool , Claire Grierson ·

YOU? · · 2020 · Open Access · · DOI: https://doi.org/10.1101/2020.05.14.095448

The physical presence of roots and the compounds they release affect the cohesion between roots and their environment. However, the plant traits that are important for these interactions are unknown and most methods that quantify the contributions of these traits are time-intensive and require specialist equipment and complex substrates. Our lab developed an inexpensive, high-throughput phenotyping assay that quantifies root-substrate adhesion in Arabidopsis thaliana . We now report that this method has high sensitivity and versatility for identifying different types of traits affecting root-substrate adhesion including root hair morphology, vesicle trafficking pathways and root exudate composition. We describe a practical protocol for conducting this assay and introduce its use in a forward genetic screen to identify novel genes affecting root-substrate interactions. This assay is a powerful tool for identifying and quantifying genetic contributions to cohesion between roots and their environment.

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Arabidopsis Thaliana

Biology

Computational Biology

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Arabidopsis thaliana Arabidopsis Cohesion (chemistry) Biology Computational biology Substrate (aquarium) Root hair Centrifuge Phenotype Botany Biological system Gene Chemistry Genetics Ecology Nuclear physics Mutant Organic chemistry Physics

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Type: preprint
Language: en
Landing Page: https://doi.org/10.1101/2020.05.14.095448
PDF: https://www.biorxiv.org/content/biorxiv/early/2021/01/21/2020.05.14.095448.full.pdf
OA Status: green
Cited By: 2
References: 63
Related Works: 10
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DOI: https://doi.org/10.1101/2020.05.14.095448

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Title: A centrifuge-based method for identifying novel genetic traits that affect root-substrate adhesion inArabidopsis thaliana

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Type: preprint

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Language: en

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Publication year: 2020

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Publication date: 2020-05-14

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Authors: Bethany M. Eldridge, Emily R. Larson, Laura Weldon, Kevin M. Smyth, Annabelle N Sellin, Isaac V. Chenchiah, Tanniemola B. Liverpool, Claire Grierson

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Landing page: https://doi.org/10.1101/2020.05.14.095448

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Concepts: Arabidopsis thaliana, Arabidopsis, Cohesion (chemistry), Biology, Computational biology, Substrate (aquarium), Root hair, Centrifuge, Phenotype, Botany, Biological system, Gene, Chemistry, Genetics, Ecology, Nuclear physics, Mutant, Organic chemistry, Physics

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Cited by: 2

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