Additional file 2: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis Article Swipe

View

Fatma Uzbaş , Florian Opperer , Can Sรถnmezer , Dmitry Shaposhnikov , Steffen Sass , Christian Krendl , Philipp Angerer , Fabian J. Theis , Nikola S. Mueller , Micha Drukker ·

YOU? · · 2019 · Open Access · · DOI: https://doi.org/10.6084/m9.figshare.9277583

Table S2. Primers and loci. Primers used for BART-Seq experiments and the list of reported mutations for 96 patient samples used in the study. (a) Genotyping primers, (b) reported genotypes of the patient samples, (c) primers used with NNN barcodes, (d) pluripotency primers, (e) differentiation primers (XLSX 45 kb)

Related Topics

Computational Biology

Concepts

Massive parallel sequencing RNA-Seq Computational biology Genomics Transcriptome Massively parallel Computer science DNA sequencing Biology Genetics Parallel computing Gene Genome Gene expression

Metadata

Type: dataset
Language: en
Landing Page: https://doi.org/10.6084/m9.figshare.9277583
OA Status: gold
Related Works: 10
OpenAlex ID: https://openalex.org/W4394078307

All OpenAlex metadata

Raw OpenAlex JSON

OpenAlex ID: https://openalex.org/W4394078307

Canonical identifier for this work in OpenAlex
DOI: https://doi.org/10.6084/m9.figshare.9277583

Digital Object Identifier
Title: Additional file 2: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Work title
Type: dataset

OpenAlex work type
Language: en

Primary language
Publication year: 2019

Year of publication
Publication date: 2019-01-01

Full publication date if available
Authors: Fatma Uzbaş, Florian Opperer, Can Sรถnmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl, Philipp Angerer, Fabian J. Theis, Nikola S. Mueller, Micha Drukker

List of authors in order
Landing page: https://doi.org/10.6084/m9.figshare.9277583

Publisher landing page
Open access: Yes

Whether a free full text is available
OA status: gold

Open access status per OpenAlex
OA URL: https://doi.org/10.6084/m9.figshare.9277583

Direct OA link when available
Concepts: Massive parallel sequencing, RNA-Seq, Computational biology, Genomics, Transcriptome, Massively parallel, Computer science, DNA sequencing, Biology, Genetics, Parallel computing, Gene, Genome, Gene expression

Top concepts (fields/topics) attached by OpenAlex
Cited by: 0

Total citation count in OpenAlex
Related works (count): 10

Other works algorithmically related by OpenAlex

Full payload

id	https://openalex.org/W4394078307
doi	https://doi.org/10.6084/m9.figshare.9277583
ids.doi	https://doi.org/10.6084/m9.figshare.9277583
ids.openalex	https://openalex.org/W4394078307
fwci
type	dataset
title	Additional file 2: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis
biblio.issue
biblio.volume
biblio.last_page
biblio.first_page
topics[0].id	https://openalex.org/T11289
topics[0].field.id	https://openalex.org/fields/13
topics[0].field.display_name	Biochemistry, Genetics and Molecular Biology
topics[0].score	0.6898999810218811
topics[0].domain.id	https://openalex.org/domains/1
topics[0].domain.display_name	Life Sciences
topics[0].subfield.id	https://openalex.org/subfields/1312
topics[0].subfield.display_name	Molecular Biology
topics[0].display_name	Single-cell and spatial transcriptomics
topics[1].id	https://openalex.org/T11287
topics[1].field.id	https://openalex.org/fields/13
topics[1].field.display_name	Biochemistry, Genetics and Molecular Biology
topics[1].score	0.65420001745224
topics[1].domain.id	https://openalex.org/domains/1
topics[1].domain.display_name	Life Sciences
topics[1].subfield.id	https://openalex.org/subfields/1306
topics[1].subfield.display_name	Cancer Research
topics[1].display_name	Cancer Genomics and Diagnostics
is_xpac	False
apc_list
apc_paid
concepts[0].id	https://openalex.org/C192800701
concepts[0].level	4
concepts[0].score	0.8588652610778809
concepts[0].wikidata	https://www.wikidata.org/wiki/Q6784807
concepts[0].display_name	Massive parallel sequencing
concepts[1].id	https://openalex.org/C107397762
concepts[1].level	5
concepts[1].score	0.7285472750663757
concepts[1].wikidata	https://www.wikidata.org/wiki/Q2542347
concepts[1].display_name	RNA-Seq
concepts[2].id	https://openalex.org/C70721500
concepts[2].level	1
concepts[2].score	0.5737826824188232
concepts[2].wikidata	https://www.wikidata.org/wiki/Q177005
concepts[2].display_name	Computational biology
concepts[3].id	https://openalex.org/C189206191
concepts[3].level	4
concepts[3].score	0.5652542114257812
concepts[3].wikidata	https://www.wikidata.org/wiki/Q222046
concepts[3].display_name	Genomics
concepts[4].id	https://openalex.org/C162317418
concepts[4].level	4
concepts[4].score	0.5349653363227844
concepts[4].wikidata	https://www.wikidata.org/wiki/Q252857
concepts[4].display_name	Transcriptome
concepts[5].id	https://openalex.org/C190475519
concepts[5].level	2
concepts[5].score	0.5156716108322144
concepts[5].wikidata	https://www.wikidata.org/wiki/Q544384
concepts[5].display_name	Massively parallel
concepts[6].id	https://openalex.org/C41008148
concepts[6].level	0
concepts[6].score	0.5152809619903564
concepts[6].wikidata	https://www.wikidata.org/wiki/Q21198
concepts[6].display_name	Computer science
concepts[7].id	https://openalex.org/C51679486
concepts[7].level	3
concepts[7].score	0.46345871686935425
concepts[7].wikidata	https://www.wikidata.org/wiki/Q380546
concepts[7].display_name	DNA sequencing
concepts[8].id	https://openalex.org/C86803240
concepts[8].level	0
concepts[8].score	0.3725574016571045
concepts[8].wikidata	https://www.wikidata.org/wiki/Q420
concepts[8].display_name	Biology
concepts[9].id	https://openalex.org/C54355233
concepts[9].level	1
concepts[9].score	0.25150996446609497
concepts[9].wikidata	https://www.wikidata.org/wiki/Q7162
concepts[9].display_name	Genetics
concepts[10].id	https://openalex.org/C173608175
concepts[10].level	1
concepts[10].score	0.21084043383598328
concepts[10].wikidata	https://www.wikidata.org/wiki/Q232661
concepts[10].display_name	Parallel computing
concepts[11].id	https://openalex.org/C104317684
concepts[11].level	2
concepts[11].score	0.20522525906562805
concepts[11].wikidata	https://www.wikidata.org/wiki/Q7187
concepts[11].display_name	Gene
concepts[12].id	https://openalex.org/C141231307
concepts[12].level	3
concepts[12].score	0.20422950387001038
concepts[12].wikidata	https://www.wikidata.org/wiki/Q7020
concepts[12].display_name	Genome
concepts[13].id	https://openalex.org/C150194340
concepts[13].level	3
concepts[13].score	0.054453253746032715
concepts[13].wikidata	https://www.wikidata.org/wiki/Q26972
concepts[13].display_name	Gene expression
keywords[0].id	https://openalex.org/keywords/massive-parallel-sequencing
keywords[0].score	0.8588652610778809
keywords[0].display_name	Massive parallel sequencing
keywords[1].id	https://openalex.org/keywords/rna-seq
keywords[1].score	0.7285472750663757
keywords[1].display_name	RNA-Seq
keywords[2].id	https://openalex.org/keywords/computational-biology
keywords[2].score	0.5737826824188232
keywords[2].display_name	Computational biology
keywords[3].id	https://openalex.org/keywords/genomics
keywords[3].score	0.5652542114257812
keywords[3].display_name	Genomics
keywords[4].id	https://openalex.org/keywords/transcriptome
keywords[4].score	0.5349653363227844
keywords[4].display_name	Transcriptome
keywords[5].id	https://openalex.org/keywords/massively-parallel
keywords[5].score	0.5156716108322144
keywords[5].display_name	Massively parallel
keywords[6].id	https://openalex.org/keywords/computer-science
keywords[6].score	0.5152809619903564
keywords[6].display_name	Computer science
keywords[7].id	https://openalex.org/keywords/dna-sequencing
keywords[7].score	0.46345871686935425
keywords[7].display_name	DNA sequencing
keywords[8].id	https://openalex.org/keywords/biology
keywords[8].score	0.3725574016571045
keywords[8].display_name	Biology
keywords[9].id	https://openalex.org/keywords/genetics
keywords[9].score	0.25150996446609497
keywords[9].display_name	Genetics
keywords[10].id	https://openalex.org/keywords/parallel-computing
keywords[10].score	0.21084043383598328
keywords[10].display_name	Parallel computing
keywords[11].id	https://openalex.org/keywords/gene
keywords[11].score	0.20522525906562805
keywords[11].display_name	Gene
keywords[12].id	https://openalex.org/keywords/genome
keywords[12].score	0.20422950387001038
keywords[12].display_name	Genome
keywords[13].id	https://openalex.org/keywords/gene-expression
keywords[13].score	0.054453253746032715
keywords[13].display_name	Gene expression
language	en
locations[0].id	doi:10.6084/m9.figshare.9277583
locations[0].is_oa	True
locations[0].source
locations[0].license	cc-by
locations[0].pdf_url
locations[0].version
locations[0].raw_type	dataset
locations[0].license_id	https://openalex.org/licenses/cc-by
locations[0].is_accepted	False
locations[0].is_published
locations[0].raw_source_name
locations[0].landing_page_url	https://doi.org/10.6084/m9.figshare.9277583
indexed_in	datacite
authorships[0].author.id	https://openalex.org/A5016111710
authorships[0].author.orcid	https://orcid.org/0000-0002-2523-7026
authorships[0].author.display_name	Fatma Uzbaş
authorships[0].author_position	first
authorships[0].raw_author_name	Fatma Uzbas
authorships[0].is_corresponding	False
authorships[1].author.id	https://openalex.org/A5084465732
authorships[1].author.orcid
authorships[1].author.display_name	Florian Opperer
authorships[1].author_position	middle
authorships[1].raw_author_name	Florian Opperer
authorships[1].is_corresponding	False
authorships[2].author.id	https://openalex.org/A5095023231
authorships[2].author.orcid
authorships[2].author.display_name	Can Sรถnmezer
authorships[2].author_position	middle
authorships[2].raw_author_name	Can Sรถnmezer
authorships[2].is_corresponding	False
authorships[3].author.id	https://openalex.org/A5028900149
authorships[3].author.orcid
authorships[3].author.display_name	Dmitry Shaposhnikov
authorships[3].author_position	middle
authorships[3].raw_author_name	Dmitry Shaposhnikov
authorships[3].is_corresponding	False
authorships[4].author.id	https://openalex.org/A5056734417
authorships[4].author.orcid	https://orcid.org/0000-0001-8939-1084
authorships[4].author.display_name	Steffen Sass
authorships[4].author_position	middle
authorships[4].raw_author_name	Steffen Sass
authorships[4].is_corresponding	False
authorships[5].author.id	https://openalex.org/A5084236240
authorships[5].author.orcid
authorships[5].author.display_name	Christian Krendl
authorships[5].author_position	middle
authorships[5].raw_author_name	Christian Krendl
authorships[5].is_corresponding	False
authorships[6].author.id	https://openalex.org/A5053620470
authorships[6].author.orcid	https://orcid.org/0000-0002-0369-2888
authorships[6].author.display_name	Philipp Angerer
authorships[6].author_position	middle
authorships[6].raw_author_name	Philipp Angerer
authorships[6].is_corresponding	False
authorships[7].author.id	https://openalex.org/A5083128670
authorships[7].author.orcid	https://orcid.org/0000-0002-2419-1943
authorships[7].author.display_name	Fabian J. Theis
authorships[7].author_position	middle
authorships[7].raw_author_name	Fabian Theis
authorships[7].is_corresponding	False
authorships[8].author.id	https://openalex.org/A5110833064
authorships[8].author.orcid
authorships[8].author.display_name	Nikola S. Mueller
authorships[8].author_position	middle
authorships[8].raw_author_name	Nikola Mueller
authorships[8].is_corresponding	False
authorships[9].author.id	https://openalex.org/A5021490322
authorships[9].author.orcid	https://orcid.org/0000-0002-4279-1125
authorships[9].author.display_name	Micha Drukker
authorships[9].author_position	last
authorships[9].raw_author_name	Micha Drukker
authorships[9].is_corresponding	False
has_content.pdf	False
has_content.grobid_xml	False
is_paratext	False
open_access.is_oa	True
open_access.oa_url	https://doi.org/10.6084/m9.figshare.9277583
open_access.oa_status	gold
open_access.any_repository_has_fulltext	False
created_date	2025-10-10T00:00:00
display_name	Additional file 2: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis
has_fulltext	False
is_retracted	False
updated_date	2025-11-06T06:51:31.235846
primary_topic.id	https://openalex.org/T11289
primary_topic.field.id	https://openalex.org/fields/13
primary_topic.field.display_name	Biochemistry, Genetics and Molecular Biology
primary_topic.score	0.6898999810218811
primary_topic.domain.id	https://openalex.org/domains/1
primary_topic.domain.display_name	Life Sciences
primary_topic.subfield.id	https://openalex.org/subfields/1312
primary_topic.subfield.display_name	Molecular Biology
primary_topic.display_name	Single-cell and spatial transcriptomics
related_works	https://openalex.org/W2596828944, https://openalex.org/W2887244195, https://openalex.org/W4390966252, https://openalex.org/W4383426117, https://openalex.org/W2522810657, https://openalex.org/W3082388066, https://openalex.org/W2343109370, https://openalex.org/W2755819208, https://openalex.org/W1978155433, https://openalex.org/W2520518209
cited_by_count	0
locations_count	1
best_oa_location.id	doi:10.6084/m9.figshare.9277583
best_oa_location.is_oa	True
best_oa_location.source
best_oa_location.license	cc-by
best_oa_location.pdf_url
best_oa_location.version
best_oa_location.raw_type	dataset
best_oa_location.license_id	https://openalex.org/licenses/cc-by
best_oa_location.is_accepted	False
best_oa_location.is_published	False
best_oa_location.raw_source_name
best_oa_location.landing_page_url	https://doi.org/10.6084/m9.figshare.9277583
primary_location.id	doi:10.6084/m9.figshare.9277583
primary_location.is_oa	True
primary_location.source
primary_location.license	cc-by
primary_location.pdf_url
primary_location.version
primary_location.raw_type	dataset
primary_location.license_id	https://openalex.org/licenses/cc-by
primary_location.is_accepted	False
primary_location.is_published	False
primary_location.raw_source_name
primary_location.landing_page_url	https://doi.org/10.6084/m9.figshare.9277583
publication_date	2019-01-01
publication_year	2019
referenced_works_count	0
abstract_inverted_index.45	47
abstract_inverted_index.96	17
abstract_inverted_index.in	21
abstract_inverted_index.of	13, 30
abstract_inverted_index.(a)	24
abstract_inverted_index.(b)	27
abstract_inverted_index.(c)	34
abstract_inverted_index.(d)	40
abstract_inverted_index.(e)	43
abstract_inverted_index.NNN	38
abstract_inverted_index.S2.	1
abstract_inverted_index.and	3, 10
abstract_inverted_index.for	7, 16
abstract_inverted_index.kb)	48
abstract_inverted_index.the	11, 22, 31
abstract_inverted_index.list	12
abstract_inverted_index.used	6, 20, 36
abstract_inverted_index.with	37
abstract_inverted_index.(XLSX	46
abstract_inverted_index.Table	0
abstract_inverted_index.loci.	4
abstract_inverted_index.study.	23
abstract_inverted_index.Primers	2, 5
abstract_inverted_index.patient	18, 32
abstract_inverted_index.primers	35, 45
abstract_inverted_index.samples	19
abstract_inverted_index.BART-Seq	8
abstract_inverted_index.primers,	26, 42
abstract_inverted_index.reported	14, 28
abstract_inverted_index.samples,	33
abstract_inverted_index.barcodes,	39
abstract_inverted_index.genotypes	29
abstract_inverted_index.mutations	15
abstract_inverted_index.Genotyping	25
abstract_inverted_index.experiments	9
abstract_inverted_index.pluripotency	41
abstract_inverted_index.differentiation	44
cited_by_percentile_year
countries_distinct_count	0
institutions_distinct_count	10
citation_normalized_percentile