Additional file 2 of Identifying novel regulatory effects for clinically relevant genes through the study of the Greek population Article Swipe
Konstantinos Rouskas
,
Efthymia A. Katsareli
,
Charalampia Amerikanou
,
Alexandros C. Dimopoulos
,
Stavros Glentis
,
Alexandra Kalantzi
,
Anargyros Skoulakis
,
Nikolaos I. Panousis
,
Halit Ongen
,
Deborah Bielser
,
Alexandra Planchon
,
Luciana Romano
,
Vaggelis Harokopos
,
Martin Reczko
,
Panagiotis Moulos
,
Ioannis Griniatsos
,
Theodoros Diamantis
,
Emmanouil T. Dermitzakis
,
Jiannis Ragoussis
,
George Dedoussis
,
Antigone S. Dimas
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.6084/m9.figshare.23896201
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.6084/m9.figshare.23896201
Additional file 2: Supplementary Table S1. eQTLs in GM adipose tissues. Supplementary Table S3. GenotypexObesity significant (p<0.05) interactions in GM. Supplementary Table S4. GenotypexSex significant (p<0.05) interactions in GM. Supplmentary Table S5. eQTLs in GM tissues, when including obesity status as a covariate. Supplementary Table S6. Missense significant (FDR<5%) ASE SNPs identified in each tissue of GM. Supplementary Table S7. Replication of eQTLs across GM tissues. Supplementary Table S8. Detection of GM eQTLs using a linear mixed model with a Genotype×Tissue interaction term (FDR<0.05). Supplementary Table S9. Thirty-five eGenes identified in one GM tissue only by both p-value enrichment analysis and linear mixed model with a Genotype×Tissue interaction term. Supplementary Table S10. Replication of eQTLs across populations for each tissue. Supplementary Table S11. Thirty-two eGenes identified in both GM tissues, but not in GTEx-am. Supplementary Table S12. GWAS-eQTL colocalizations (RTC≥0.9) in GM for each tissue. Supplementary Table S14. Sharing of eGene-trait pairs in GM and GTEx-am. Supplementary Table S15. Expression levels of eGenes corresponding to GM specific eGene-trait pairs in GM and GTEx-am. Supplementary Table S16. Secondary, and not primary, eQTL colocalizations with GWAS signals in GM.
Related Topics
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Metadata
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Additional file 2 of Identifying novel regulatory effects for clinically relevant genes through the study of the Greek populationWork title
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datasetOpenAlex work type
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enPrimary language
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2023Year of publication
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2023-01-01Full publication date if available
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Konstantinos Rouskas, Efthymia A. Katsareli, Charalampia Amerikanou, Alexandros C. Dimopoulos, Stavros Glentis, Alexandra Kalantzi, Anargyros Skoulakis, Nikolaos I. Panousis, Halit Ongen, Deborah Bielser, Alexandra Planchon, Luciana Romano, Vaggelis Harokopos, Martin Reczko, Panagiotis Moulos, Ioannis Griniatsos, Theodoros Diamantis, Emmanouil T. Dermitzakis, Jiannis Ragoussis, George Dedoussis, Antigone S. DimasList of authors in order
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goldOpen access status per OpenAlex
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