Additional file 6: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis Article Swipe

View

Fatma Uzbaş , Florian Opperer , Can SĂśnmezer , Dmitry Shaposhnikov , Steffen Sass , Christian Krendl , Philipp Angerer , Fabian Theis , Nikola S. Mueller , Micha Drukker ·

YOU? · · 2019 · Open Access · · DOI: https://doi.org/10.6084/m9.figshare.9277610

Table S6. Wnt experiment. De-multiplexed NGS read counts of the differentiation (Wnt/Î˛-catenin) experiment. (a) Replicate 1, (b) replicate 2, (c) replicate 3 (XLSX 851 kb)

Related Topics

Computer Science

Computational Biology

Concepts

Massive parallel sequencing Massively parallel RNA-Seq Computer science Transcriptome Computational biology Genomics DNA sequencing Parallel computing Biology Genetics Genome Gene Gene expression

Metadata

Type: dataset
Language: en
Landing Page: https://doi.org/10.6084/m9.figshare.9277610
OA Status: gold
Related Works: 10
OpenAlex ID: https://openalex.org/W4394531616

All OpenAlex metadata

Raw OpenAlex JSON

OpenAlex ID: https://openalex.org/W4394531616

Canonical identifier for this work in OpenAlex
DOI: https://doi.org/10.6084/m9.figshare.9277610

Digital Object Identifier
Title: Additional file 6: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Work title
Type: dataset

OpenAlex work type
Language: en

Primary language
Publication year: 2019

Year of publication
Publication date: 2019-01-01

Full publication date if available
Authors: Fatma Uzbaş, Florian Opperer, Can SĂśnmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl, Philipp Angerer, Fabian Theis, Nikola S. Mueller, Micha Drukker

List of authors in order
Landing page: https://doi.org/10.6084/m9.figshare.9277610

Publisher landing page
Open access: Yes

Whether a free full text is available
OA status: gold

Open access status per OpenAlex
OA URL: https://doi.org/10.6084/m9.figshare.9277610

Direct OA link when available
Concepts: Massive parallel sequencing, Massively parallel, RNA-Seq, Computer science, Transcriptome, Computational biology, Genomics, DNA sequencing, Parallel computing, Biology, Genetics, Genome, Gene, Gene expression

Top concepts (fields/topics) attached by OpenAlex
Cited by: 0

Total citation count in OpenAlex
Related works (count): 10

Other works algorithmically related by OpenAlex

Full payload

id	https://openalex.org/W4394531616
doi	https://doi.org/10.6084/m9.figshare.9277610
ids.doi	https://doi.org/10.6084/m9.figshare.9277610
ids.openalex	https://openalex.org/W4394531616
fwci
type	dataset
title	Additional file 6: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis
biblio.issue
biblio.volume
biblio.last_page
biblio.first_page
topics[0].id	https://openalex.org/T11287
topics[0].field.id	https://openalex.org/fields/13
topics[0].field.display_name	Biochemistry, Genetics and Molecular Biology
topics[0].score	0.567300021648407
topics[0].domain.id	https://openalex.org/domains/1
topics[0].domain.display_name	Life Sciences
topics[0].subfield.id	https://openalex.org/subfields/1306
topics[0].subfield.display_name	Cancer Research
topics[0].display_name	Cancer Genomics and Diagnostics
topics[1].id	https://openalex.org/T11289
topics[1].field.id	https://openalex.org/fields/13
topics[1].field.display_name	Biochemistry, Genetics and Molecular Biology
topics[1].score	0.5496000051498413
topics[1].domain.id	https://openalex.org/domains/1
topics[1].domain.display_name	Life Sciences
topics[1].subfield.id	https://openalex.org/subfields/1312
topics[1].subfield.display_name	Molecular Biology
topics[1].display_name	Single-cell and spatial transcriptomics
is_xpac	False
apc_list
apc_paid
concepts[0].id	https://openalex.org/C192800701
concepts[0].level	4
concepts[0].score	0.8610241413116455
concepts[0].wikidata	https://www.wikidata.org/wiki/Q6784807
concepts[0].display_name	Massive parallel sequencing
concepts[1].id	https://openalex.org/C190475519
concepts[1].level	2
concepts[1].score	0.7370752096176147
concepts[1].wikidata	https://www.wikidata.org/wiki/Q544384
concepts[1].display_name	Massively parallel
concepts[2].id	https://openalex.org/C107397762
concepts[2].level	5
concepts[2].score	0.6944149732589722
concepts[2].wikidata	https://www.wikidata.org/wiki/Q2542347
concepts[2].display_name	RNA-Seq
concepts[3].id	https://openalex.org/C41008148
concepts[3].level	0
concepts[3].score	0.5974851846694946
concepts[3].wikidata	https://www.wikidata.org/wiki/Q21198
concepts[3].display_name	Computer science
concepts[4].id	https://openalex.org/C162317418
concepts[4].level	4
concepts[4].score	0.5711007118225098
concepts[4].wikidata	https://www.wikidata.org/wiki/Q252857
concepts[4].display_name	Transcriptome
concepts[5].id	https://openalex.org/C70721500
concepts[5].level	1
concepts[5].score	0.5372322797775269
concepts[5].wikidata	https://www.wikidata.org/wiki/Q177005
concepts[5].display_name	Computational biology
concepts[6].id	https://openalex.org/C189206191
concepts[6].level	4
concepts[6].score	0.5130245089530945
concepts[6].wikidata	https://www.wikidata.org/wiki/Q222046
concepts[6].display_name	Genomics
concepts[7].id	https://openalex.org/C51679486
concepts[7].level	3
concepts[7].score	0.41626936197280884
concepts[7].wikidata	https://www.wikidata.org/wiki/Q380546
concepts[7].display_name	DNA sequencing
concepts[8].id	https://openalex.org/C173608175
concepts[8].level	1
concepts[8].score	0.3433946371078491
concepts[8].wikidata	https://www.wikidata.org/wiki/Q232661
concepts[8].display_name	Parallel computing
concepts[9].id	https://openalex.org/C86803240
concepts[9].level	0
concepts[9].score	0.33014845848083496
concepts[9].wikidata	https://www.wikidata.org/wiki/Q420
concepts[9].display_name	Biology
concepts[10].id	https://openalex.org/C54355233
concepts[10].level	1
concepts[10].score	0.20701271295547485
concepts[10].wikidata	https://www.wikidata.org/wiki/Q7162
concepts[10].display_name	Genetics
concepts[11].id	https://openalex.org/C141231307
concepts[11].level	3
concepts[11].score	0.19393318891525269
concepts[11].wikidata	https://www.wikidata.org/wiki/Q7020
concepts[11].display_name	Genome
concepts[12].id	https://openalex.org/C104317684
concepts[12].level	2
concepts[12].score	0.18730217218399048
concepts[12].wikidata	https://www.wikidata.org/wiki/Q7187
concepts[12].display_name	Gene
concepts[13].id	https://openalex.org/C150194340
concepts[13].level	3
concepts[13].score	0.05639928579330444
concepts[13].wikidata	https://www.wikidata.org/wiki/Q26972
concepts[13].display_name	Gene expression
keywords[0].id	https://openalex.org/keywords/massive-parallel-sequencing
keywords[0].score	0.8610241413116455
keywords[0].display_name	Massive parallel sequencing
keywords[1].id	https://openalex.org/keywords/massively-parallel
keywords[1].score	0.7370752096176147
keywords[1].display_name	Massively parallel
keywords[2].id	https://openalex.org/keywords/rna-seq
keywords[2].score	0.6944149732589722
keywords[2].display_name	RNA-Seq
keywords[3].id	https://openalex.org/keywords/computer-science
keywords[3].score	0.5974851846694946
keywords[3].display_name	Computer science
keywords[4].id	https://openalex.org/keywords/transcriptome
keywords[4].score	0.5711007118225098
keywords[4].display_name	Transcriptome
keywords[5].id	https://openalex.org/keywords/computational-biology
keywords[5].score	0.5372322797775269
keywords[5].display_name	Computational biology
keywords[6].id	https://openalex.org/keywords/genomics
keywords[6].score	0.5130245089530945
keywords[6].display_name	Genomics
keywords[7].id	https://openalex.org/keywords/dna-sequencing
keywords[7].score	0.41626936197280884
keywords[7].display_name	DNA sequencing
keywords[8].id	https://openalex.org/keywords/parallel-computing
keywords[8].score	0.3433946371078491
keywords[8].display_name	Parallel computing
keywords[9].id	https://openalex.org/keywords/biology
keywords[9].score	0.33014845848083496
keywords[9].display_name	Biology
keywords[10].id	https://openalex.org/keywords/genetics
keywords[10].score	0.20701271295547485
keywords[10].display_name	Genetics
keywords[11].id	https://openalex.org/keywords/genome
keywords[11].score	0.19393318891525269
keywords[11].display_name	Genome
keywords[12].id	https://openalex.org/keywords/gene
keywords[12].score	0.18730217218399048
keywords[12].display_name	Gene
keywords[13].id	https://openalex.org/keywords/gene-expression
keywords[13].score	0.05639928579330444
keywords[13].display_name	Gene expression
language	en
locations[0].id	doi:10.6084/m9.figshare.9277610
locations[0].is_oa	True
locations[0].source
locations[0].license	cc-by
locations[0].pdf_url
locations[0].version
locations[0].raw_type	dataset
locations[0].license_id	https://openalex.org/licenses/cc-by
locations[0].is_accepted	False
locations[0].is_published
locations[0].raw_source_name
locations[0].landing_page_url	https://doi.org/10.6084/m9.figshare.9277610
indexed_in	datacite
authorships[0].author.id	https://openalex.org/A5016111710
authorships[0].author.orcid	https://orcid.org/0000-0002-2523-7026
authorships[0].author.display_name	Fatma Uzbaş
authorships[0].author_position	first
authorships[0].raw_author_name	Fatma Uzbas
authorships[0].is_corresponding	False
authorships[1].author.id	https://openalex.org/A5084465732
authorships[1].author.orcid
authorships[1].author.display_name	Florian Opperer
authorships[1].author_position	middle
authorships[1].raw_author_name	Florian Opperer
authorships[1].is_corresponding	False
authorships[2].author.id	https://openalex.org/A5095033959
authorships[2].author.orcid
authorships[2].author.display_name	Can SĂśnmezer
authorships[2].author_position	middle
authorships[2].raw_author_name	Can SĂśnmezer
authorships[2].is_corresponding	False
authorships[3].author.id	https://openalex.org/A5028900149
authorships[3].author.orcid
authorships[3].author.display_name	Dmitry Shaposhnikov
authorships[3].author_position	middle
authorships[3].raw_author_name	Dmitry Shaposhnikov
authorships[3].is_corresponding	False
authorships[4].author.id	https://openalex.org/A5056734417
authorships[4].author.orcid	https://orcid.org/0000-0001-8939-1084
authorships[4].author.display_name	Steffen Sass
authorships[4].author_position	middle
authorships[4].raw_author_name	Steffen Sass
authorships[4].is_corresponding	False
authorships[5].author.id	https://openalex.org/A5084236240
authorships[5].author.orcid
authorships[5].author.display_name	Christian Krendl
authorships[5].author_position	middle
authorships[5].raw_author_name	Christian Krendl
authorships[5].is_corresponding	False
authorships[6].author.id	https://openalex.org/A5053620470
authorships[6].author.orcid	https://orcid.org/0000-0002-0369-2888
authorships[6].author.display_name	Philipp Angerer
authorships[6].author_position	middle
authorships[6].raw_author_name	Philipp Angerer
authorships[6].is_corresponding	False
authorships[7].author.id	https://openalex.org/A5062566971
authorships[7].author.orcid
authorships[7].author.display_name	Fabian Theis
authorships[7].author_position	middle
authorships[7].raw_author_name	Fabian Theis
authorships[7].is_corresponding	False
authorships[8].author.id	https://openalex.org/A5110833064
authorships[8].author.orcid
authorships[8].author.display_name	Nikola S. Mueller
authorships[8].author_position	middle
authorships[8].raw_author_name	Nikola Mueller
authorships[8].is_corresponding	False
authorships[9].author.id	https://openalex.org/A5021490322
authorships[9].author.orcid	https://orcid.org/0000-0002-4279-1125
authorships[9].author.display_name	Micha Drukker
authorships[9].author_position	last
authorships[9].raw_author_name	Micha Drukker
authorships[9].is_corresponding	False
has_content.pdf	False
has_content.grobid_xml	False
is_paratext	False
open_access.is_oa	True
open_access.oa_url	https://doi.org/10.6084/m9.figshare.9277610
open_access.oa_status	gold
open_access.any_repository_has_fulltext	False
created_date	2025-10-10T00:00:00
display_name	Additional file 6: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis
has_fulltext	False
is_retracted	False
updated_date	2025-11-06T06:51:31.235846
primary_topic.id	https://openalex.org/T11287
primary_topic.field.id	https://openalex.org/fields/13
primary_topic.field.display_name	Biochemistry, Genetics and Molecular Biology
primary_topic.score	0.567300021648407
primary_topic.domain.id	https://openalex.org/domains/1
primary_topic.domain.display_name	Life Sciences
primary_topic.subfield.id	https://openalex.org/subfields/1306
primary_topic.subfield.display_name	Cancer Research
primary_topic.display_name	Cancer Genomics and Diagnostics
related_works	https://openalex.org/W2596828944, https://openalex.org/W2887244195, https://openalex.org/W4390966252, https://openalex.org/W4383426117, https://openalex.org/W2522810657, https://openalex.org/W3082388066, https://openalex.org/W2343109370, https://openalex.org/W2755819208, https://openalex.org/W1978155433, https://openalex.org/W2520518209
cited_by_count	0
locations_count	1
best_oa_location.id	doi:10.6084/m9.figshare.9277610
best_oa_location.is_oa	True
best_oa_location.source
best_oa_location.license	cc-by
best_oa_location.pdf_url
best_oa_location.version
best_oa_location.raw_type	dataset
best_oa_location.license_id	https://openalex.org/licenses/cc-by
best_oa_location.is_accepted	False
best_oa_location.is_published	False
best_oa_location.raw_source_name
best_oa_location.landing_page_url	https://doi.org/10.6084/m9.figshare.9277610
primary_location.id	doi:10.6084/m9.figshare.9277610
primary_location.is_oa	True
primary_location.source
primary_location.license	cc-by
primary_location.pdf_url
primary_location.version
primary_location.raw_type	dataset
primary_location.license_id	https://openalex.org/licenses/cc-by
primary_location.is_accepted	False
primary_location.is_published	False
primary_location.raw_source_name
primary_location.landing_page_url	https://doi.org/10.6084/m9.figshare.9277610
publication_date	2019-01-01
publication_year	2019
referenced_works_count	0
abstract_inverted_index.3	21
abstract_inverted_index.1,	15
abstract_inverted_index.2,	18
abstract_inverted_index.of	8
abstract_inverted_index.(a)	13
abstract_inverted_index.(b)	16
abstract_inverted_index.(c)	19
abstract_inverted_index.851	23
abstract_inverted_index.NGS	5
abstract_inverted_index.S6.	1
abstract_inverted_index.Wnt	2
abstract_inverted_index.kb)	24
abstract_inverted_index.the	9
abstract_inverted_index.read	6
abstract_inverted_index.(XLSX	22
abstract_inverted_index.Table	0
abstract_inverted_index.counts	7
abstract_inverted_index.Replicate	14
abstract_inverted_index.replicate	17, 20
abstract_inverted_index.experiment.	3, 12
abstract_inverted_index.De-multiplexed	4
abstract_inverted_index.differentiation	10
abstract_inverted_index.(Wnt/Î˛-catenin)	11
cited_by_percentile_year
countries_distinct_count	0
institutions_distinct_count	10
citation_normalized_percentile