Altered mRNA transport and local translation in iNeurons with RNA binding protein knockdown Article Swipe
YOU?
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· 2024
· Open Access
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· DOI: https://doi.org/10.1101/2024.09.26.615153
Neurons rely on mRNA transport and local translation to facilitate rapid protein synthesis in processes far from the cell body. These processes allow precise spatial and temporal control of translation and are mediated by RNA binding proteins (RBPs), including those known to be associated with neurodegenerative diseases. Here, we use proteomics, transcriptomics, and microscopy to investigate the impact of RBP knockdown on mRNA transport and local translation in iPSC-derived neurons. We find thousands of transcripts enriched in neurites and that many of these transcripts are locally translated, possibly due to the shorter length of transcripts in neurites. Loss of frontotemporal dementia/amyotrophic lateral sclerosis (FTD/ALS)-associated RBPs TDP- 43 and hnRNPA1 lead to distinct alterations in the neuritic proteome and transcriptome. TDP-43 knockdown (KD) leads to increased neuritic mRNA and translation. In contrast, hnRNPA1 leads to increased neuritic mRNA, but not translation, and more moderate effects on local mRNA profiles, possibly due to compensation by hnRNPA3. These results highlight the crucial role of FTD/ALS-associated RBPs in mRNA transport and local translation in neurons and the importance of these processes in neuron health and disease.
Related Topics
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2024.09.26.615153
- OA Status
- green
- Cited By
- 3
- References
- 64
- Related Works
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- OpenAlex ID
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Raw OpenAlex JSON
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https://openalex.org/W4402908119Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2024.09.26.615153Digital Object Identifier
- Title
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Altered mRNA transport and local translation in iNeurons with RNA binding protein knockdownWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
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2024-09-27Full publication date if available
- Authors
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Rachael Dargan, Alla Mikheenko, Nicholas L. Johnson, Benjamin Packer, Ziyi Li, Emma J. Craig, Stephanie L. Sarbanes, Colleen Bereda, Puja R. Mehta, Matthew J. Keuss, Mike A. Nalls, Yue Qi, Cory A. Weller, Pietro Fratta, Veronica H. RyanList of authors in order
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https://doi.org/10.1101/2024.09.26.615153Publisher landing page
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YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://doi.org/10.1101/2024.09.26.615153Direct OA link when available
- Concepts
-
Gene knockdown, Messenger RNA, Translation (biology), RNA-binding protein, Cell biology, RNA, Chemistry, Molecular biology, Biology, Biochemistry, GeneTop concepts (fields/topics) attached by OpenAlex
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3Total citation count in OpenAlex
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2025: 3Per-year citation counts (last 5 years)
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64Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| referenced_works | https://openalex.org/W4393315783, https://openalex.org/W4390669392, https://openalex.org/W4394579804, https://openalex.org/W4372332501, https://openalex.org/W2130410032, https://openalex.org/W4399123405, https://openalex.org/W3208691473, https://openalex.org/W2127753171, https://openalex.org/W2073073462, https://openalex.org/W2149000887, https://openalex.org/W2120728136, https://openalex.org/W2195925510, https://openalex.org/W2035618305, https://openalex.org/W3049616059, https://openalex.org/W2132166526, https://openalex.org/W2755967204, https://openalex.org/W2074393382, https://openalex.org/W2010457001, https://openalex.org/W2154923417, https://openalex.org/W4297627084, https://openalex.org/W4391258663, https://openalex.org/W3092338105, https://openalex.org/W1965286266, https://openalex.org/W2179438025, https://openalex.org/W2803819386, https://openalex.org/W2760524820, https://openalex.org/W2795614118, https://openalex.org/W2159713770, https://openalex.org/W3158711214, https://openalex.org/W3024189181, https://openalex.org/W2067132969, https://openalex.org/W3004751996, https://openalex.org/W2079226464, https://openalex.org/W4389704443, https://openalex.org/W4287577957, https://openalex.org/W2995312562, https://openalex.org/W2914447702, https://openalex.org/W2107554012, https://openalex.org/W2949324846, https://openalex.org/W2991106430, https://openalex.org/W1853546723, https://openalex.org/W2951257711, https://openalex.org/W4386865771, https://openalex.org/W2138207763, https://openalex.org/W2169456326, https://openalex.org/W2592811885, https://openalex.org/W2785329615, https://openalex.org/W3131055609, https://openalex.org/W4317797127, https://openalex.org/W2077610405, https://openalex.org/W3080570440, https://openalex.org/W4327681881, https://openalex.org/W3138498421, https://openalex.org/W2513030033, https://openalex.org/W4323048959, https://openalex.org/W3096676253, https://openalex.org/W53544134, https://openalex.org/W2967789674, https://openalex.org/W2103017472, https://openalex.org/W4388946825, https://openalex.org/W2102883851, https://openalex.org/W3131024606, https://openalex.org/W1969701330, https://openalex.org/W3159204943 |
| referenced_works_count | 64 |
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| abstract_inverted_index.be | 43 |
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| abstract_inverted_index.due | 89, 150 |
| abstract_inverted_index.far | 16 |
| abstract_inverted_index.not | 139 |
| abstract_inverted_index.the | 18, 57, 91, 115, 158, 173 |
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| abstract_inverted_index.(KD) | 122 |
| abstract_inverted_index.Loss | 98 |
| abstract_inverted_index.RBPs | 105, 163 |
| abstract_inverted_index.TDP- | 106 |
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| abstract_inverted_index.find | 72 |
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| abstract_inverted_index.body. | 20 |
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| abstract_inverted_index.TDP-43 | 120 |
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| abstract_inverted_index.impact | 58 |
| abstract_inverted_index.length | 93 |
| abstract_inverted_index.neuron | 179 |
| abstract_inverted_index.(RBPs), | 38 |
| abstract_inverted_index.Neurons | 1 |
| abstract_inverted_index.binding | 36 |
| abstract_inverted_index.control | 28 |
| abstract_inverted_index.crucial | 159 |
| abstract_inverted_index.effects | 144 |
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| abstract_inverted_index.spatial | 25 |
| abstract_inverted_index.Abstract | 0 |
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| abstract_inverted_index.enriched | 76 |
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| abstract_inverted_index.contrast, | 131 |
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| abstract_inverted_index.knockdown | 61, 121 |
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| abstract_inverted_index.profiles, | 148 |
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| abstract_inverted_index.iPSC-derived | 69 |
| abstract_inverted_index.translation, | 140 |
| abstract_inverted_index.translation. | 129 |
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| abstract_inverted_index.(FTD/ALS)-associated | 104 |
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| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |