An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes Article Swipe

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Elisabetta Furlanis , Min Dai , Brenda Leyva Garcia , Josselyn Vergara , Ana Pereira , Kenneth A. Pelkey , Thien Khai Tran , Bram L. Gorissen , Anna Vlachos , Ariel Hairston , Shuhan Huang , Deepanjali Dwivedi , Sarah Du , Sara Wills , Justin McMahon , Anthony T. Lee , Edward F. Chang , Taha Razzaq , Ahmed Qazi , Geoffrey Vargish , Xiaoqing Yuan , Adam Caccavano , Steven Hunt , Ramesh Chittajallu , Nadiya McLean , Lauren Hewit , Emily Paranzino , Haley Rice , Alex C. Cummins , Anya Plotnikova , Arya Mohanty , Anne Claire Tangen , Jung Hoon Shin , Reza Azadi , Mark A. G. Eldridge , Veronica A. Alvarez , Bruno B. Averbeck , Mansour Alyahyay , Tania Reyes Vallejo , Mohammed Soheib , Lucas G. Vattino , Cathryn P MacGregor , Emmie Banks , Viktor Janos Oláh , Shovan Naskar , Sophie Hill , Sophie R Liebergall , Rohan Badiani , Lili Hyde , Qing Xu , Kathryn Allaway , Ethan M. Goldberg , Tomasz J. Nowakowski , Soohyun Lee , Anne E. Takesian , Leena A. Ibrahim , Asim Iqbal , Chris J. McBain , Jordane Dimidschstein , Gord Fishell , Yating Wang ·

YOU? · · 2024 · Open Access · · DOI: https://doi.org/10.1101/2024.07.17.603924

SUMMARY In recent years, we and others have identified a number of enhancers that, when incorporated into rAAV vectors, can restrict the transgene expression to particular neuronal populations. Yet, viral tools to access and manipulate specific neuronal subtypes are still limited. Here, we performed systematic analysis of single cell genomic data to identify enhancer candidates for each of the telencephalic interneuron subtypes. We established a set of enhancer-AAV tools that are highly specific for distinct cortical interneuron populations and striatal cholinergic interneurons. These enhancers, when used in the context of different effectors, can target (fluorescent proteins), observe activity (GCaMP) and manipulate (opto-genetics) specific neuronal subtypes. We also validated our enhancer-AAV tools across species. Thus, we provide the field with a powerful set of tools to study neural circuits and functions and to develop precise and targeted therapy.

Related Topics

Interneuron

Biology

Neuroscience

Computational Biology

Concepts

Enhancer Interneuron Biology Neuroscience Context (archaeology) Transgene Computational biology Set (abstract data type) Genetics Gene Gene expression Computer science Inhibitory postsynaptic potential Programming language Paleontology

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Type: preprint
Language: en
Landing Page: https://doi.org/10.1101/2024.07.17.603924
OA Status: green
Cited By: 19
References: 64
Related Works: 10
OpenAlex ID: https://openalex.org/W4400876335

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OpenAlex ID: https://openalex.org/W4400876335

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DOI: https://doi.org/10.1101/2024.07.17.603924

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Title: An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes

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Type: preprint

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Language: en

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Publication year: 2024

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Publication date: 2024-07-22

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Authors: Elisabetta Furlanis, Min Dai, Brenda Leyva Garcia, Josselyn Vergara, Ana Pereira, Kenneth A. Pelkey, Thien Khai Tran, Bram L. Gorissen, Anna Vlachos, Ariel Hairston, Shuhan Huang, Deepanjali Dwivedi, Sarah Du, Sara Wills, Justin McMahon, Anthony T. Lee, Edward F. Chang, Taha Razzaq, Ahmed Qazi, Geoffrey Vargish, Xiaoqing Yuan, Adam Caccavano, Steven Hunt, Ramesh Chittajallu, Nadiya McLean, Lauren Hewit, Emily Paranzino, Haley Rice, Alex C. Cummins, Anya Plotnikova, Arya Mohanty, Anne Claire Tangen, Jung Hoon Shin, Reza Azadi, Mark A. G. Eldridge, Veronica A. Alvarez, Bruno B. Averbeck, Mansour Alyahyay, Tania Reyes Vallejo, Mohammed Soheib, Lucas G. Vattino, Cathryn P MacGregor, Emmie Banks, Viktor Janos Oláh, Shovan Naskar, Sophie Hill, Sophie R Liebergall, Rohan Badiani, Lili Hyde, Qing Xu, Kathryn Allaway, Ethan M. Goldberg, Tomasz J. Nowakowski, Soohyun Lee, Anne E. Takesian, Leena A. Ibrahim, Asim Iqbal, Chris J. McBain, Jordane Dimidschstein, Gord Fishell, Yating Wang

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Landing page: https://doi.org/10.1101/2024.07.17.603924

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Open access: Yes

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OA status: green

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OA URL: https://www.ncbi.nlm.nih.gov/pmc/articles/11291062

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Concepts: Enhancer, Interneuron, Biology, Neuroscience, Context (archaeology), Transgene, Computational biology, Set (abstract data type), Genetics, Gene, Gene expression, Computer science, Inhibitory postsynaptic potential, Programming language, Paleontology

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Cited by: 19

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Citations by year (recent): 2025: 8, 2024: 11

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Related works (count): 10

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