[An interlaboratory comparison study on the detection of RUNX1-RUNX1T1 fusion transcript levels and WT1 transcript levels]. Article Swipe
Y Z Qin
,
Liang Zhu
,
Sen Lin
,
Suxia Geng
,
Sujia Liu
,
Cheng He
,
Changjing Wu
,
Meng Xiao
,
Xiaoqing Li
,
Rui-Fang Hu
,
Linlin Wang
,
Hsing‐Yin Liu
,
D X
,
Tao Guan
,
Yifan Ye
,
Ting Niu
,
J N Cen
,
Long‐Sheng Lu
,
Lei Sun
,
Ting Yang
,
Yongguang Wang
,
Tao Li
,
Yun Wang
,
Q H Li
,
Xiang‐Yu Zhao
,
L D Li
,
W M Chen
,
Lingyun Long
,
Xiao‐Jun Huang
·
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.3760/cma.j.issn.0253-2727.2019.11.001
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.3760/cma.j.issn.0253-2727.2019.11.001
Objective: To investigate the current status and real performance of the detection of RUNX1-RUNX1T1 fusion transcript levels and WT1 transcript levels in China through interlaboratory comparison. Methods: Peking University People's Hospital (PKUPH) prepared the samples for comparison. That is, the fresh RUNX1-RUNX1T1 positive (+) bone morrow nucleated cells were serially diluted with RUNX1-RUNX1T1 negative (-) nucleated cells from different patients. Totally 23 sets with 14 different samples per set were prepared. TRIzol reagent was added in each tube and thoroughly mixed with cells for homogenization. Each laboratory simultaneously tested RUNX1-RUNX1T1 and WT1 transcript levels of one set of samples by real-time quantitative PCR method. All transcript levels were reported as the percentage of RUNX1-RUNX1T1 or WT1 transcript copies/ABL copies. Spearman correlation coefficient between the reported transcript levels of each participated laboratory and those of PKUPH was calculated. Results: ①RUNX1-RUNX1T1 comparison: 9 samples were (+) and 5 were (-) , the false negative and positive rates of the 20 participated laboratories were 0 (0/180) and 5% (5/100) , respectively. The reported transcript levels of all 9 positive samples were different among laboratories. The median reported transcript levels of 9 positive samples were from 0.060% to 176.7%, which covered 3.5-log. The ratios of each sample's highest to the lowest reported transcript levels were from 5.5 to 12.3 (one result which obviously deviated from other laboratories' results was not included) , 85% (17/20) of the laboratories had correlation coefficient ≥0.98. ②WT1 comparison: The median reported transcript levels of all 14 samples were from 0.17% to 67.6%, which covered 2.6-log. The ratios of each sample's highest to the lowest reported transcript levels were from 5.3-13.7, 62% (13/21) of the laboratories had correlation coefficient ≥0.98. ③ The relative relationship of the reported RUNX1-RUNX1T1 transcript levels between the participants and PKUPH was not always consistent with that of WT1 transcript levels. Both RUNX1-RUNX1T1 and WT1 transcript levels from 2 and 7 laboratories were individually lower than and higher than those of PKUPH, whereas for the rest 11 laboratories, one transcript level was higher than and the other was lower than that of PKUPH. Conclusion: The reported RUNX1-RUNX1T1 and WT1 transcript levels were different among laboratories for the same sample. Most of the participated laboratories reported highly consistent result with that of PKUPH. The relationship between laboratories of the different transcript levels may not be the same.
Related Topics
Concepts
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://pubmed.ncbi.nlm.nih.gov/31856435
- OA Status
- green
- References
- 14
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3000707122
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W3000707122Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3760/cma.j.issn.0253-2727.2019.11.001Digital Object Identifier
- Title
-
[An interlaboratory comparison study on the detection of RUNX1-RUNX1T1 fusion transcript levels and WT1 transcript levels].Work title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
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2019Year of publication
- Publication date
-
2019-11-14Full publication date if available
- Authors
-
Y Z Qin, Liang Zhu, Sen Lin, Suxia Geng, Sujia Liu, Cheng He, Changjing Wu, Meng Xiao, Xiaoqing Li, Rui-Fang Hu, Linlin Wang, Hsing‐Yin Liu, D X, Tao Guan, Yifan Ye, Ting Niu, J N Cen, Long‐Sheng Lu, Lei Sun, Ting Yang, Yongguang Wang, Tao Li, Yun Wang, Q H Li, Xiang‐Yu Zhao, L D Li, W M Chen, Lingyun Long, Xiao‐Jun HuangList of authors in order
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https://pubmed.ncbi.nlm.nih.gov/31856435Publisher landing page
- Open access
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YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.ncbi.nlm.nih.gov/pmc/articles/7342382Direct OA link when available
- Concepts
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Fusion transcript, Biology, Molecular biology, Gene, Fusion gene, GeneticsTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
- References (count)
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14Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.2 | 312 |
| abstract_inverted_index.5 | 145 |
| abstract_inverted_index.7 | 314 |
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| abstract_inverted_index.11 | 330 |
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| abstract_inverted_index.(+) | 43, 143 |
| abstract_inverted_index.(-) | 54, 147 |
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| abstract_inverted_index.85% | 228 |
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| abstract_inverted_index.<b>Objective:</b> | 0 |
| abstract_inverted_index.<b>Conclusion:</b> | 347 |
| cited_by_percentile_year | |
| countries_distinct_count | 1 |
| institutions_distinct_count | 29 |
| citation_normalized_percentile.value | 0.2611829 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |