An issue of concern: unique truncated ORF8 protein variants of SARS-CoV-2 Article Swipe
Sk. Sarif Hassan
,
Vaishnavi Kodakandla
,
Elrashdy M. Redwan
,
Kenneth Lundström
,
Pabitra Pal Choudhury
,
Tarek Mohamed Abd El‐Aziz
,
Kazuo Takayama
,
Ramesh Kandimalla
,
Amos Lal
,
Ángel Serrano‐Aroca
,
Gajendra Kumar Azad
,
Alaa A. A. Aljabali
,
Giorgio Palù
,
Gaurav Chauhan
,
Parise Adadi
,
Murtaza M. Tambuwala
,
Adam Brufsky
,
Wagner Baetas‐da‐Cruz
,
Debmalya Barh
,
Vasco Azevedo
,
Nikolas Bazan
,
Bruno Silva Andrade
,
Raner José Santana Silva
,
Vladimir N. Uversky
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.7717/peerj.13136
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.7717/peerj.13136
Open reading frame 8 (ORF8) shows one of the highest levels of variability among accessory proteins in Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the causative agent of Coronavirus Disease 2019 (COVID-19). It was previously reported that the ORF8 protein inhibits the presentation of viral antigens by the major histocompatibility complex class I (MHC-I), which interacts with host factors involved in pulmonary inflammation. The ORF8 protein assists SARS-CoV-2 in evading immunity and plays a role in SARS-CoV-2 replication. Among many contributing mutations, Q27STOP, a mutation in the ORF8 protein, defines the B.1.1.7 lineage of SARS-CoV-2, engendering the second wave of COVID-19. In the present study, 47 unique truncated ORF8 proteins (T-ORF8) with the Q27STOP mutations were identified among 49,055 available B.1.1.7 SARS-CoV-2 sequences. The results show that only one of the 47 T-ORF8 variants spread to over 57 geo-locations in North America, and other continents, which include Africa, Asia, Europe and South America. Based on various quantitative features, such as amino acid homology, polar/non-polar sequence homology, Shannon entropy conservation, and other physicochemical properties of all specific 47 T-ORF8 protein variants, nine possible T-ORF8 unique variants were defined. The question as to whether T-ORF8 variants function similarly to the wild type ORF8 is yet to be investigated. A positive response to the question could exacerbate future COVID-19 waves, necessitating severe containment measures.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.7717/peerj.13136
- OA Status
- gold
- Cited By
- 14
- References
- 81
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4225753914
All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W4225753914Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.7717/peerj.13136Digital Object Identifier
- Title
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An issue of concern: unique truncated ORF8 protein variants of SARS-CoV-2Work title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-03-21Full publication date if available
- Authors
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Sk. Sarif Hassan, Vaishnavi Kodakandla, Elrashdy M. Redwan, Kenneth Lundström, Pabitra Pal Choudhury, Tarek Mohamed Abd El‐Aziz, Kazuo Takayama, Ramesh Kandimalla, Amos Lal, Ángel Serrano‐Aroca, Gajendra Kumar Azad, Alaa A. A. Aljabali, Giorgio Palù, Gaurav Chauhan, Parise Adadi, Murtaza M. Tambuwala, Adam Brufsky, Wagner Baetas‐da‐Cruz, Debmalya Barh, Vasco Azevedo, Nikolas Bazan, Bruno Silva Andrade, Raner José Santana Silva, Vladimir N. UverskyList of authors in order
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https://doi.org/10.7717/peerj.13136Publisher landing page
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://doi.org/10.7717/peerj.13136Direct OA link when available
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Mutation, Homology (biology), Biology, Medicine, Immunology, Amino acid, Genetics, GeneTop concepts (fields/topics) attached by OpenAlex
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14Total citation count in OpenAlex
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2025: 1, 2023: 6, 2022: 5, 2021: 2Per-year citation counts (last 5 years)
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81Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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