An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases Article Swipe

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Bottleneck Computer science Infectious disease (medical specialty) Modular design DNA sequencing Computational biology Data science Bioinformatics Biology Disease Medicine Genetics DNA Programming language Embedded system Pathology

Alexander S. F. Berry , Camila Farias Amorim , Corbett T. Berry , Camille M. Syrett , Elizabeth D. English , Daniel P. Beiting ·

YOU? · · 2021 · Open Access · · DOI: https://doi.org/10.1128/mbio.01214-21 · OA: W3179449912

As access to high-throughput sequencing technology has increased, the bottleneck in biomedical research has shifted from data generation to data analysis. Here, we describe a modular and extensible framework for didactic instruction in bioinformatics using publicly available RNA sequencing data sets from infectious disease studies, with a focus on host-parasite interactions.