Analysis of translation using polysome profiling Article Swipe
Héloïse Chassé
,
Sandrine Boulben
,
Vlad Costache
,
Patrick Cormier
,
Julia Morales
·
YOU?
·
· 2016
· Open Access
·
· DOI: https://doi.org/10.1093/nar/gkw907
YOU?
·
· 2016
· Open Access
·
· DOI: https://doi.org/10.1093/nar/gkw907
During the past decade, there has been growing interest in the role of translational regulation of gene expression in many organisms. Polysome profiling has been developed to infer the translational status of a specific mRNA species or to analyze the translatome, i.e. the subset of mRNAs actively translated in a cell. Polysome profiling is especially suitable for emergent model organisms for which genomic data are limited. In this paper, we describe an optimized protocol for the purification of sea urchin polysomes and highlight the critical steps involved in polysome purification. We applied this protocol to obtain experimental results on translational regulation of mRNAs following fertilization. Our protocol should prove useful for integrating the study of the role of translational regulation in gene regulatory networks in any biological model. In addition, we demonstrate how to carry out high-throughput processing of polysome gradient fractions, for the simultaneous screening of multiple biological conditions and large-scale preparation of samples for next-generation sequencing.
Related Topics
Concepts
Polysome
Biology
Translation (biology)
Translational regulation
Computational biology
Messenger RNA
Translational efficiency
Gene expression profiling
Ribosome profiling
Protein biosynthesis
Gene expression
Gene
Cell biology
RNA
Genetics
Ribosome
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/nar/gkw907
- https://academic.oup.com/nar/article-pdf/45/3/e15/25363967/gkw907.pdf
- OA Status
- gold
- Cited By
- 192
- References
- 44
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2529733312
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2529733312Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/nar/gkw907Digital Object Identifier
- Title
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Analysis of translation using polysome profilingWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
-
2016Year of publication
- Publication date
-
2016-09-30Full publication date if available
- Authors
-
Héloïse Chassé, Sandrine Boulben, Vlad Costache, Patrick Cormier, Julia MoralesList of authors in order
- Landing page
-
https://doi.org/10.1093/nar/gkw907Publisher landing page
- PDF URL
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https://academic.oup.com/nar/article-pdf/45/3/e15/25363967/gkw907.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
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https://academic.oup.com/nar/article-pdf/45/3/e15/25363967/gkw907.pdfDirect OA link when available
- Concepts
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Polysome, Biology, Translation (biology), Translational regulation, Computational biology, Messenger RNA, Translational efficiency, Gene expression profiling, Ribosome profiling, Protein biosynthesis, Gene expression, Gene, Cell biology, RNA, Genetics, RibosomeTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
192Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 21, 2024: 23, 2023: 25, 2022: 31, 2021: 24Per-year citation counts (last 5 years)
- References (count)
-
44Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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