Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response: Application to the 2017 plague epidemic in Madagascar Article Swipe
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· 2022
· Open Access
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· DOI: https://doi.org/10.1371/journal.pbio.3001736
During outbreaks, the lack of diagnostic “gold standard” can mask the true burden of infection in the population and hamper the allocation of resources required for control. Here, we present an analytical framework to evaluate and optimize the use of diagnostics when multiple yet imperfect diagnostic tests are available. We apply it to laboratory results of 2,136 samples, analyzed with 3 diagnostic tests (based on up to 7 diagnostic outcomes), collected during the 2017 pneumonic (PP) and bubonic plague (BP) outbreak in Madagascar, which was unprecedented both in the number of notified cases, clinical presentation, and spatial distribution. The extent of these outbreaks has however remained unclear due to nonoptimal assays. Using latent class methods, we estimate that 7% to 15% of notified cases were Yersinia pestis -infected. Overreporting was highest during the peak of the outbreak and lowest in the rural settings endemic to Y . pestis . Molecular biology methods offered the best compromise between sensitivity and specificity. The specificity of the rapid diagnostic test was relatively low (PP: 82%, BP: 85%), particularly for use in contexts with large quantities of misclassified cases. Comparison with data from a subsequent seasonal Y . pestis outbreak in 2018 reveal better test performance (BP: specificity 99%, sensitivity: 91%), indicating that factors related to the response to a large, explosive outbreak may well have affected test performance. We used our framework to optimize the case classification and derive consolidated epidemic trends. Our approach may help reduce uncertainties in other outbreaks where diagnostics are imperfect.
Related Topics
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1371/journal.pbio.3001736
- OA Status
- gold
- Cited By
- 6
- References
- 28
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4291618258
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4291618258Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1371/journal.pbio.3001736Digital Object Identifier
- Title
-
Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response: Application to the 2017 plague epidemic in MadagascarWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2022Year of publication
- Publication date
-
2022-08-15Full publication date if available
- Authors
-
Quirine A. ten Bosch, Voahangy Andrianaivoarimanana, Beza Ramasindrazana, Guillain Mikaty, Rado J. L. Rakotonanahary, Birgit Nikolay, Soloandry Rahajandraibe, Maxence Feher, Quentin Grassin, Juliette Paireau, Soanandrasana Rahelinirina, Rindra Vatosoa Randremanana, Feno Manitra Jacob Rakotoarimanana, Marie Melocco, Voahangy Rasolofo, Javier Pizarro‐Cerdá, Anne‐Sophie Le Guern, Eric Bertherat, Maherisoa Ratsitorahina, André Spiegel, Laurence Baril, Minoarisoa Rajerison, Simon CauchemezList of authors in order
- Landing page
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https://doi.org/10.1371/journal.pbio.3001736Publisher landing page
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://doi.org/10.1371/journal.pbio.3001736Direct OA link when available
- Concepts
-
Outbreak, Yersinia pestis, Biology, Diagnostic test, Population, Plague (disease), Gold standard (test), Statistics, Virology, Environmental health, Veterinary medicine, Medicine, Pathology, Genetics, Mathematics, Virulence, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
6Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 1, 2024: 2, 2023: 2, 2022: 1Per-year citation counts (last 5 years)
- References (count)
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28Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| corresponding_author_ids | https://openalex.org/A5083823901, https://openalex.org/A5079659683, https://openalex.org/A5111095863, https://openalex.org/A5063953350, https://openalex.org/A5008514010, https://openalex.org/A5029620996, https://openalex.org/A5022054893, https://openalex.org/A5110882269, https://openalex.org/A5028870523, https://openalex.org/A5056039334, https://openalex.org/A5057317969, https://openalex.org/A5051228747, https://openalex.org/A5106623550, https://openalex.org/A5000242585, https://openalex.org/A5031086614, https://openalex.org/A5086312696, https://openalex.org/A5051017538, https://openalex.org/A5039632747, https://openalex.org/A5078631562, https://openalex.org/A5032656508, https://openalex.org/A5090602512, https://openalex.org/A5001224683, https://openalex.org/A5089452031 |
| countries_distinct_count | 4 |
| institutions_distinct_count | 23 |
| corresponding_institution_ids | https://openalex.org/I1294671590, https://openalex.org/I157536573, https://openalex.org/I204730241, https://openalex.org/I4210105654, https://openalex.org/I4210133373, https://openalex.org/I4210162822, https://openalex.org/I913481162 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/3 |
| sustainable_development_goals[0].score | 0.8600000143051147 |
| sustainable_development_goals[0].display_name | Good health and well-being |
| citation_normalized_percentile.value | 0.80615202 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |