Ancient methicillin-resistantStaphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection Article Swipe
Vanni Benvenga
,
Aline Cuénod
,
inithi Purushothaman
,
Gottfried Dasen
,
Maja Weisser
,
Stefano Bassetti
,
Tim Roloff
,
Martin Siegemund
,
Ulrich Heininger
,
Julia Bielicki
,
Marianne Wehrli
,
Paul Friderich
,
Reno Frei
,
Andreas F. Widmer
,
Kathrin Herzog
,
Hans Fankhauser
,
Oliver Nolte
,
Thomas Bodmer
,
Martin Risch
,
Olivier Dubuis
,
Sigrid Pranghofer
,
Romana Calligaris-Maibach
,
Susanne Graf
,
Sarah Tschudin‐Sutter
,
Vincent Perreten
,
Helena M. B. Seth-Smith
,
Adrian Egli
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1101/2023.04.27.538514
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1101/2023.04.27.538514
Few methicillin-resistant Staphylococcus aureus (MRSA) from the early years of its global emergence have been sequenced. Knowledge about evolutionary factors promoting the success of specific MRSA multi-locus sequence types (MLSTs) remains scarce. We aimed to characterize a legacy MRSA collection isolated from 1965 to 1987 and compare it against publicly available international and local genomes. We accessed 451 ancient (1965-1987) Swiss MRSA isolates, stored in the Culture Collection of Switzerland. We determined phenotypic antimicrobial resistance (AMR) and performed Illumina short-read sequencing on all isolates and long-read sequencing on a selection with Oxford Nanopore Technology. For context, we included 103 publicly available international genomes from 1960 to 1992 and sequenced 1207 modern Swiss MRSA isolates from 2007 to 2022. We analyzed the core genome (cg)MLST and predicted SCC mec cassette types, AMR, and virulence genes. Among the 451 ancient Swiss MRSA isolates, we found 17 sequence types (STs) of which 11 have been previously described. Two STs were novel combinations of known loci and six isolates carried previously unsubmitted MLST alleles, representing five new STs (ST7843, ST7844, ST7837, ST7839, and ST7842). Most isolates (83% 376/451) represented ST247-MRSA-I isolated in the 1960s, followed by ST7844 (6% 25/451), a novel single locus variant (SLV) of ST239. Analysis by cgMLST indicated that isolates belonging to ST7844-MRSA-III cluster within the diversity of ST239-MRSA-IIII. Early MRSA were predominantly from clonal complex (CC) 8. From 1980 to the end of the 20 th century we observed that CC22 and CC5 as well as CC8 were present, both locally and internationally. The combined analysis of 1761 ancient and contemporary MRSA isolates across more than 50 years uncovered novel STs and allowed us a glimpse into the lineage flux between Swiss and international MRSA across time.
Related Topics
Concepts
Multilocus sequence typing
Biology
Locus (genetics)
Context (archaeology)
Genome
Genetics
Staphylococcus aureus
Methicillin-resistant Staphylococcus aureus
Whole genome sequencing
Typing
Molecular epidemiology
Antibiotic resistance
Virulence
Evolutionary biology
Microbiology
Gene
Genotype
Antibiotics
Bacteria
Paleontology
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2023.04.27.538514
- https://www.biorxiv.org/content/biorxiv/early/2023/04/27/2023.04.27.538514.full.pdf
- OA Status
- green
- References
- 80
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4367300505
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4367300505Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1101/2023.04.27.538514Digital Object Identifier
- Title
-
Ancient methicillin-resistantStaphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collectionWork title
- Type
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preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2023Year of publication
- Publication date
-
2023-04-27Full publication date if available
- Authors
-
Vanni Benvenga, Aline Cuénod, inithi Purushothaman, Gottfried Dasen, Maja Weisser, Stefano Bassetti, Tim Roloff, Martin Siegemund, Ulrich Heininger, Julia Bielicki, Marianne Wehrli, Paul Friderich, Reno Frei, Andreas F. Widmer, Kathrin Herzog, Hans Fankhauser, Oliver Nolte, Thomas Bodmer, Martin Risch, Olivier Dubuis, Sigrid Pranghofer, Romana Calligaris-Maibach, Susanne Graf, Sarah Tschudin‐Sutter, Vincent Perreten, Helena M. B. Seth-Smith, Adrian EgliList of authors in order
- Landing page
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https://doi.org/10.1101/2023.04.27.538514Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2023/04/27/2023.04.27.538514.full.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
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https://www.biorxiv.org/content/biorxiv/early/2023/04/27/2023.04.27.538514.full.pdfDirect OA link when available
- Concepts
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Multilocus sequence typing, Biology, Locus (genetics), Context (archaeology), Genome, Genetics, Staphylococcus aureus, Methicillin-resistant Staphylococcus aureus, Whole genome sequencing, Typing, Molecular epidemiology, Antibiotic resistance, Virulence, Evolutionary biology, Microbiology, Gene, Genotype, Antibiotics, Bacteria, PaleontologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
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80Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.virulence | 133 |
| abstract_inverted_index.Collection | 68 |
| abstract_inverted_index.collection | 40 |
| abstract_inverted_index.described. | 154 |
| abstract_inverted_index.determined | 72 |
| abstract_inverted_index.phenotypic | 73 |
| abstract_inverted_index.previously | 153, 167 |
| abstract_inverted_index.resistance | 75 |
| abstract_inverted_index.sequenced. | 16 |
| abstract_inverted_index.sequencing | 81, 87 |
| abstract_inverted_index.short-read | 80 |
| abstract_inverted_index.(1965-1987) | 60 |
| abstract_inverted_index.Technology. | 94 |
| abstract_inverted_index.multi-locus | 27 |
| abstract_inverted_index.represented | 185 |
| abstract_inverted_index.unsubmitted | 168 |
| abstract_inverted_index.ST247-MRSA-I | 186 |
| abstract_inverted_index.Switzerland. | 70 |
| abstract_inverted_index.characterize | 36 |
| abstract_inverted_index.combinations | 159 |
| abstract_inverted_index.contemporary | 261 |
| abstract_inverted_index.evolutionary | 19 |
| abstract_inverted_index.representing | 171 |
| abstract_inverted_index.antimicrobial | 74 |
| abstract_inverted_index.international | 52, 102, 284 |
| abstract_inverted_index.predominantly | 222 |
| abstract_inverted_index.Staphylococcus | 3 |
| abstract_inverted_index.ST7844-MRSA-III | 212 |
| abstract_inverted_index.ST239-MRSA-IIII. | 218 |
| abstract_inverted_index.internationally. | 253 |
| abstract_inverted_index.methicillin-resistant | 2 |
| cited_by_percentile_year | |
| corresponding_author_ids | https://openalex.org/A5053893299 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 27 |
| corresponding_institution_ids | https://openalex.org/I1850255, https://openalex.org/I202697423, https://openalex.org/I2802542264, https://openalex.org/I4210155534 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/3 |
| sustainable_development_goals[0].score | 0.44999998807907104 |
| sustainable_development_goals[0].display_name | Good health and well-being |
| citation_normalized_percentile.value | 0.07538939 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |