Antimicrobial Resistance Genes in Respiratory Bacteria from Weaned Dairy Heifers Article Swipe
Sarah M. Depenbrock
,
Cory Schlesener
,
Sharif S. Aly
,
Deniece R. Williams
,
Wagdy R. ElAshmawy
,
Gary McArthur
,
Kristin A. Clothier
,
John R. Wenz
,
Heather Fritz
,
Munashe Chigerwe
,
Bart C. Weimer
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.3390/pathogens13040300
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.3390/pathogens13040300
Bovine respiratory disease (BRD) is the leading cause of mortality and antimicrobial drug (AMD) use in weaned dairy heifers. Limited information is available regarding antimicrobial resistance (AMR) in respiratory bacteria in this population. This study determined AMR gene presence in 326 respiratory isolates (Pasteurella multocida, Mannheimia haemolytica, and Histophilus somni) from weaned dairy heifers using whole genome sequencing. Concordance between AMR genotype and phenotype was determined. Twenty-six AMR genes for 8 broad classes of AMD were identified. The most prevalent, medically important AMD classes used in calf rearing, to which these genes predict AMR among study isolates were tetracycline (95%), aminoglycoside (94%), sulfonamide (94%), beta-lactam (77%), phenicol (50%), and macrolide (44%). The co-occurrence of AMR genes within an isolate was common; the largest cluster of gene co-occurrence encodes AMR to phenicol, macrolide, elfamycin, β-lactam (cephalosporin, penam cephamycin), aminoglycoside, tetracycline, and sulfonamide class AMD. Concordance between genotype and phenotype varied (Matthew’s Correlation Coefficient ranged from −0.57 to 1) by bacterial species, gene, and AMD tested, and was particularly poor for fluoroquinolones (no AMR genes detected) and ceftiofur (no phenotypic AMR classified while AMR genes present). These findings suggest a high genetic potential for AMR in weaned dairy heifers; preventing BRD and decreasing AMD reliance may be important in this population.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/pathogens13040300
- https://www.mdpi.com/2076-0817/13/4/300/pdf?version=1712147819
- OA Status
- gold
- Cited By
- 3
- References
- 66
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4393854725
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4393854725Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3390/pathogens13040300Digital Object Identifier
- Title
-
Antimicrobial Resistance Genes in Respiratory Bacteria from Weaned Dairy HeifersWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-04-03Full publication date if available
- Authors
-
Sarah M. Depenbrock, Cory Schlesener, Sharif S. Aly, Deniece R. Williams, Wagdy R. ElAshmawy, Gary McArthur, Kristin A. Clothier, John R. Wenz, Heather Fritz, Munashe Chigerwe, Bart C. WeimerList of authors in order
- Landing page
-
https://doi.org/10.3390/pathogens13040300Publisher landing page
- PDF URL
-
https://www.mdpi.com/2076-0817/13/4/300/pdf?version=1712147819Direct link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.mdpi.com/2076-0817/13/4/300/pdf?version=1712147819Direct OA link when available
- Concepts
-
Biology, Microbiology, Tetracycline, Antibiotic resistance, Pasteurella multocida, Ceftiofur, Population, Cephalosporin, Bovine respiratory disease, Antimicrobial, Genotype, Gene, Bacteria, Antibiotics, Genetics, Medicine, Environmental healthTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
3Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 2, 2024: 1Per-year citation counts (last 5 years)
- References (count)
-
66Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.high | 188 |
| abstract_inverted_index.most | 78 |
| abstract_inverted_index.poor | 167 |
| abstract_inverted_index.this | 31, 207 |
| abstract_inverted_index.used | 84 |
| abstract_inverted_index.were | 75, 97 |
| abstract_inverted_index.(AMD) | 13 |
| abstract_inverted_index.(AMR) | 26 |
| abstract_inverted_index.(BRD) | 3 |
| abstract_inverted_index.These | 184 |
| abstract_inverted_index.among | 94 |
| abstract_inverted_index.broad | 71 |
| abstract_inverted_index.cause | 7 |
| abstract_inverted_index.class | 141 |
| abstract_inverted_index.dairy | 17, 52, 195 |
| abstract_inverted_index.gene, | 160 |
| abstract_inverted_index.genes | 68, 91, 115, 172, 182 |
| abstract_inverted_index.penam | 135 |
| abstract_inverted_index.study | 34, 95 |
| abstract_inverted_index.these | 90 |
| abstract_inverted_index.using | 54 |
| abstract_inverted_index.which | 89 |
| abstract_inverted_index.while | 180 |
| abstract_inverted_index.whole | 55 |
| abstract_inverted_index.(44%). | 110 |
| abstract_inverted_index.(50%), | 107 |
| abstract_inverted_index.(77%), | 105 |
| abstract_inverted_index.(94%), | 101, 103 |
| abstract_inverted_index.(95%), | 99 |
| abstract_inverted_index.Bovine | 0 |
| abstract_inverted_index.genome | 56 |
| abstract_inverted_index.ranged | 152 |
| abstract_inverted_index.somni) | 49 |
| abstract_inverted_index.varied | 148 |
| abstract_inverted_index.weaned | 16, 51, 194 |
| abstract_inverted_index.within | 116 |
| abstract_inverted_index.Limited | 19 |
| abstract_inverted_index.between | 59, 144 |
| abstract_inverted_index.classes | 72, 83 |
| abstract_inverted_index.cluster | 123 |
| abstract_inverted_index.common; | 120 |
| abstract_inverted_index.disease | 2 |
| abstract_inverted_index.encodes | 127 |
| abstract_inverted_index.genetic | 189 |
| abstract_inverted_index.heifers | 53 |
| abstract_inverted_index.isolate | 118 |
| abstract_inverted_index.largest | 122 |
| abstract_inverted_index.leading | 6 |
| abstract_inverted_index.predict | 92 |
| abstract_inverted_index.suggest | 186 |
| abstract_inverted_index.tested, | 163 |
| abstract_inverted_index.−0.57 | 154 |
| abstract_inverted_index.bacteria | 29 |
| abstract_inverted_index.findings | 185 |
| abstract_inverted_index.genotype | 61, 145 |
| abstract_inverted_index.heifers. | 18 |
| abstract_inverted_index.heifers; | 196 |
| abstract_inverted_index.isolates | 42, 96 |
| abstract_inverted_index.phenicol | 106 |
| abstract_inverted_index.presence | 38 |
| abstract_inverted_index.rearing, | 87 |
| abstract_inverted_index.reliance | 202 |
| abstract_inverted_index.species, | 159 |
| abstract_inverted_index.available | 22 |
| abstract_inverted_index.bacterial | 158 |
| abstract_inverted_index.ceftiofur | 175 |
| abstract_inverted_index.detected) | 173 |
| abstract_inverted_index.important | 81, 205 |
| abstract_inverted_index.macrolide | 109 |
| abstract_inverted_index.medically | 80 |
| abstract_inverted_index.mortality | 9 |
| abstract_inverted_index.phenicol, | 130 |
| abstract_inverted_index.phenotype | 63, 147 |
| abstract_inverted_index.potential | 190 |
| abstract_inverted_index.present). | 183 |
| abstract_inverted_index.regarding | 23 |
| abstract_inverted_index.β-lactam | 133 |
| abstract_inverted_index.Mannheimia | 45 |
| abstract_inverted_index.Twenty-six | 66 |
| abstract_inverted_index.classified | 179 |
| abstract_inverted_index.decreasing | 200 |
| abstract_inverted_index.determined | 35 |
| abstract_inverted_index.elfamycin, | 132 |
| abstract_inverted_index.macrolide, | 131 |
| abstract_inverted_index.multocida, | 44 |
| abstract_inverted_index.phenotypic | 177 |
| abstract_inverted_index.prevalent, | 79 |
| abstract_inverted_index.preventing | 197 |
| abstract_inverted_index.resistance | 25 |
| abstract_inverted_index.Coefficient | 151 |
| abstract_inverted_index.Concordance | 58, 143 |
| abstract_inverted_index.Correlation | 150 |
| abstract_inverted_index.Histophilus | 48 |
| abstract_inverted_index.beta-lactam | 104 |
| abstract_inverted_index.determined. | 65 |
| abstract_inverted_index.identified. | 76 |
| abstract_inverted_index.information | 20 |
| abstract_inverted_index.population. | 32, 208 |
| abstract_inverted_index.respiratory | 1, 28, 41 |
| abstract_inverted_index.sequencing. | 57 |
| abstract_inverted_index.sulfonamide | 102, 140 |
| abstract_inverted_index.(Matthew’s | 149 |
| abstract_inverted_index.(Pasteurella | 43 |
| abstract_inverted_index.cephamycin), | 136 |
| abstract_inverted_index.haemolytica, | 46 |
| abstract_inverted_index.particularly | 166 |
| abstract_inverted_index.tetracycline | 98 |
| abstract_inverted_index.antimicrobial | 11, 24 |
| abstract_inverted_index.co-occurrence | 112, 126 |
| abstract_inverted_index.tetracycline, | 138 |
| abstract_inverted_index.aminoglycoside | 100 |
| abstract_inverted_index.(cephalosporin, | 134 |
| abstract_inverted_index.aminoglycoside, | 137 |
| abstract_inverted_index.fluoroquinolones | 169 |
| cited_by_percentile_year.max | 97 |
| cited_by_percentile_year.min | 90 |
| corresponding_author_ids | https://openalex.org/A5041144029, https://openalex.org/A5087020653 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 11 |
| corresponding_institution_ids | https://openalex.org/I84218800 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/1 |
| sustainable_development_goals[0].score | 0.4399999976158142 |
| sustainable_development_goals[0].display_name | No poverty |
| sustainable_development_goals[1].id | https://metadata.un.org/sdg/3 |
| sustainable_development_goals[1].score | 0.4300000071525574 |
| sustainable_development_goals[1].display_name | Good health and well-being |
| citation_normalized_percentile.value | 0.78860759 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |