aplot: Simplifying the creation of complex graphs to visualize associations across diverse data types Article Swipe
Shuangbin Xu
,
Qianwen Wang
,
Shaodi Wen
,
Junrui Li
,
Nan He
,
Ming Li
,
Thomas Hackl
,
Rui Wang
,
Dongqiang Zeng
,
Shixiang Wang
,
Shensuo Li
,
Chunhui Gao
,
Lang Zhou
,
Silin Tao
,
Zijing Xie
,
Deng Lin
,
Guangchuang Yu
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1016/j.xinn.2025.100958
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1016/j.xinn.2025.100958
Effective data visualization is crucial for researchers, revealing patterns, trends, and insights that might otherwise remain hidden. Integrating related visualizations can reveal correlations and relationships that are not evident when analyzing datasets separately. Despite increasing demand, there is a shortage of general tools to seamlessly combine diverse datasets to create complex visual representations. The aplot package addresses this by allowing users to independently create subplots and assemble them into a cohesive composite figure. It automatically reorders datasets for coordinate consistency, removing the need for manual adjustment. This modular approach simplifies the creation of complex visualizations, allowing customization to meet specific needs. Aplot's versatility is ideal for integrating multi-omics datasets and analytical results for biological insights. The package is freely available on CRAN at https://cran.r-project.org/package=aplot, offering researchers a powerful tool for enhanced data exploration and visualizing workflows.
Related Topics
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1016/j.xinn.2025.100958
- OA Status
- gold
- Cited By
- 3
- References
- 19
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4410593823
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4410593823Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1016/j.xinn.2025.100958Digital Object Identifier
- Title
-
aplot: Simplifying the creation of complex graphs to visualize associations across diverse data typesWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2025Year of publication
- Publication date
-
2025-05-22Full publication date if available
- Authors
-
Shuangbin Xu, Qianwen Wang, Shaodi Wen, Junrui Li, Nan He, Ming Li, Thomas Hackl, Rui Wang, Dongqiang Zeng, Shixiang Wang, Shensuo Li, Chunhui Gao, Lang Zhou, Silin Tao, Zijing Xie, Deng Lin, Guangchuang YuList of authors in order
- Landing page
-
https://doi.org/10.1016/j.xinn.2025.100958Publisher landing page
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://doi.org/10.1016/j.xinn.2025.100958Direct OA link when available
- Concepts
-
Data science, Computer science, Graph drawing, Visualization, Data miningTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
3Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 3Per-year citation counts (last 5 years)
- References (count)
-
19Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W4410593823 |
|---|---|
| doi | https://doi.org/10.1016/j.xinn.2025.100958 |
| ids.doi | https://doi.org/10.1016/j.xinn.2025.100958 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/40979292 |
| ids.openalex | https://openalex.org/W4410593823 |
| fwci | 28.99101974 |
| type | article |
| title | aplot: Simplifying the creation of complex graphs to visualize associations across diverse data types |
| biblio.issue | 9 |
| biblio.volume | 6 |
| biblio.last_page | 100958 |
| biblio.first_page | 100958 |
| topics[0].id | https://openalex.org/T10538 |
| topics[0].field.id | https://openalex.org/fields/17 |
| topics[0].field.display_name | Computer Science |
| topics[0].score | 0.9797999858856201 |
| topics[0].domain.id | https://openalex.org/domains/3 |
| topics[0].domain.display_name | Physical Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1710 |
| topics[0].subfield.display_name | Information Systems |
| topics[0].display_name | Data Mining Algorithms and Applications |
| topics[1].id | https://openalex.org/T10799 |
| topics[1].field.id | https://openalex.org/fields/17 |
| topics[1].field.display_name | Computer Science |
| topics[1].score | 0.9749000072479248 |
| topics[1].domain.id | https://openalex.org/domains/3 |
| topics[1].domain.display_name | Physical Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1707 |
| topics[1].subfield.display_name | Computer Vision and Pattern Recognition |
| topics[1].display_name | Data Visualization and Analytics |
| topics[2].id | https://openalex.org/T10887 |
| topics[2].field.id | https://openalex.org/fields/13 |
| topics[2].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[2].score | 0.9745000004768372 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1312 |
| topics[2].subfield.display_name | Molecular Biology |
| topics[2].display_name | Bioinformatics and Genomic Networks |
| funders[0].id | https://openalex.org/F4320321001 |
| funders[0].ror | https://ror.org/01h0zpd94 |
| funders[0].display_name | National Natural Science Foundation of China |
| is_xpac | False |
| apc_list.value | 5000 |
| apc_list.currency | USD |
| apc_list.value_usd | 5000 |
| apc_paid.value | 5000 |
| apc_paid.currency | USD |
| apc_paid.value_usd | 5000 |
| concepts[0].id | https://openalex.org/C2522767166 |
| concepts[0].level | 1 |
| concepts[0].score | 0.5294418334960938 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q2374463 |
| concepts[0].display_name | Data science |
| concepts[1].id | https://openalex.org/C41008148 |
| concepts[1].level | 0 |
| concepts[1].score | 0.46317487955093384 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[1].display_name | Computer science |
| concepts[2].id | https://openalex.org/C112953755 |
| concepts[2].level | 3 |
| concepts[2].score | 0.41617459058761597 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q739462 |
| concepts[2].display_name | Graph drawing |
| concepts[3].id | https://openalex.org/C36464697 |
| concepts[3].level | 2 |
| concepts[3].score | 0.30343279242515564 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q451553 |
| concepts[3].display_name | Visualization |
| concepts[4].id | https://openalex.org/C124101348 |
| concepts[4].level | 1 |
| concepts[4].score | 0.269916832447052 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q172491 |
| concepts[4].display_name | Data mining |
| keywords[0].id | https://openalex.org/keywords/data-science |
| keywords[0].score | 0.5294418334960938 |
| keywords[0].display_name | Data science |
| keywords[1].id | https://openalex.org/keywords/computer-science |
| keywords[1].score | 0.46317487955093384 |
| keywords[1].display_name | Computer science |
| keywords[2].id | https://openalex.org/keywords/graph-drawing |
| keywords[2].score | 0.41617459058761597 |
| keywords[2].display_name | Graph drawing |
| keywords[3].id | https://openalex.org/keywords/visualization |
| keywords[3].score | 0.30343279242515564 |
| keywords[3].display_name | Visualization |
| keywords[4].id | https://openalex.org/keywords/data-mining |
| keywords[4].score | 0.269916832447052 |
| keywords[4].display_name | Data mining |
| language | en |
| locations[0].id | doi:10.1016/j.xinn.2025.100958 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S4210236180 |
| locations[0].source.issn | 2666-6758 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 2666-6758 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | The Innovation |
| locations[0].source.host_organization | https://openalex.org/P4310320990 |
| locations[0].source.host_organization_name | Elsevier BV |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310320990 |
| locations[0].source.host_organization_lineage_names | Elsevier BV |
| locations[0].license | |
| locations[0].pdf_url | |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | The Innovation |
| locations[0].landing_page_url | https://doi.org/10.1016/j.xinn.2025.100958 |
| locations[1].id | pmid:40979292 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | Innovation (Cambridge (Mass.)) |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/40979292 |
| locations[2].id | pmh:oai:doaj.org/article:2fda6454fd754780868365752adc1c34 |
| locations[2].is_oa | False |
| locations[2].source.id | https://openalex.org/S4306401280 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | DOAJ (DOAJ: Directory of Open Access Journals) |
| locations[2].source.host_organization | |
| locations[2].source.host_organization_name | |
| locations[2].license | |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | article |
| locations[2].license_id | |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | The Innovation, Vol 6, Iss 9, Pp 100958- (2025) |
| locations[2].landing_page_url | https://doaj.org/article/2fda6454fd754780868365752adc1c34 |
| locations[3].id | pmh:oai:europepmc.org:11257195 |
| locations[3].is_oa | True |
| locations[3].source.id | https://openalex.org/S4306400806 |
| locations[3].source.issn | |
| locations[3].source.type | repository |
| locations[3].source.is_oa | False |
| locations[3].source.issn_l | |
| locations[3].source.is_core | False |
| locations[3].source.is_in_doaj | False |
| locations[3].source.display_name | Europe PMC (PubMed Central) |
| locations[3].source.host_organization | https://openalex.org/I1303153112 |
| locations[3].source.host_organization_name | European Bioinformatics Institute |
| locations[3].source.host_organization_lineage | https://openalex.org/I1303153112 |
| locations[3].license | other-oa |
| locations[3].pdf_url | |
| locations[3].version | submittedVersion |
| locations[3].raw_type | Text |
| locations[3].license_id | https://openalex.org/licenses/other-oa |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | |
| locations[3].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/12447650 |
| indexed_in | crossref, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5000421632 |
| authorships[0].author.orcid | https://orcid.org/0000-0003-3513-5362 |
| authorships[0].author.display_name | Shuangbin Xu |
| authorships[0].countries | CN |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I58200834 |
| authorships[0].affiliations[0].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[0].institutions[0].id | https://openalex.org/I58200834 |
| authorships[0].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[0].institutions[0].country_code | CN |
| authorships[0].institutions[0].display_name | Southern Medical University |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Shuangbin Xu |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[1].author.id | https://openalex.org/A5100609687 |
| authorships[1].author.orcid | https://orcid.org/0000-0003-3553-1162 |
| authorships[1].author.display_name | Qianwen Wang |
| authorships[1].countries | CN |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I58200834 |
| authorships[1].affiliations[0].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[1].institutions[0].id | https://openalex.org/I58200834 |
| authorships[1].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[1].institutions[0].country_code | CN |
| authorships[1].institutions[0].display_name | Southern Medical University |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Qianwen Wang |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[2].author.id | https://openalex.org/A5072444138 |
| authorships[2].author.orcid | https://orcid.org/0000-0001-7951-0123 |
| authorships[2].author.display_name | Shaodi Wen |
| authorships[2].countries | CN |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I4210128482, https://openalex.org/I83519826 |
| authorships[2].affiliations[0].raw_affiliation_string | Department of Oncology, The Affiliated Cancer Hospital of Nanjing Medical University & Jiangsu Cancer Hospital, Nanjing, China. |
| authorships[2].affiliations[1].institution_ids | https://openalex.org/I58200834 |
| authorships[2].affiliations[1].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[2].institutions[0].id | https://openalex.org/I4210128482 |
| authorships[2].institutions[0].ror | https://ror.org/03108sf43 |
| authorships[2].institutions[0].type | healthcare |
| authorships[2].institutions[0].lineage | https://openalex.org/I4210128482 |
| authorships[2].institutions[0].country_code | CN |
| authorships[2].institutions[0].display_name | Jiangsu Cancer Hospital |
| authorships[2].institutions[1].id | https://openalex.org/I83519826 |
| authorships[2].institutions[1].ror | https://ror.org/059gcgy73 |
| authorships[2].institutions[1].type | education |
| authorships[2].institutions[1].lineage | https://openalex.org/I83519826 |
| authorships[2].institutions[1].country_code | CN |
| authorships[2].institutions[1].display_name | Nanjing Medical University |
| authorships[2].institutions[2].id | https://openalex.org/I58200834 |
| authorships[2].institutions[2].ror | https://ror.org/01vjw4z39 |
| authorships[2].institutions[2].type | education |
| authorships[2].institutions[2].lineage | https://openalex.org/I58200834 |
| authorships[2].institutions[2].country_code | CN |
| authorships[2].institutions[2].display_name | Southern Medical University |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Shaodi Wen |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China., Department of Oncology, The Affiliated Cancer Hospital of Nanjing Medical University & Jiangsu Cancer Hospital, Nanjing, China. |
| authorships[3].author.id | https://openalex.org/A5003149434 |
| authorships[3].author.orcid | |
| authorships[3].author.display_name | Junrui Li |
| authorships[3].countries | CN |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I4210103346, https://openalex.org/I58200834 |
| authorships[3].affiliations[0].raw_affiliation_string | Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[3].institutions[0].id | https://openalex.org/I4210103346 |
| authorships[3].institutions[0].ror | https://ror.org/01eq10738 |
| authorships[3].institutions[0].type | healthcare |
| authorships[3].institutions[0].lineage | https://openalex.org/I4210103346 |
| authorships[3].institutions[0].country_code | CN |
| authorships[3].institutions[0].display_name | Nanfang Hospital |
| authorships[3].institutions[1].id | https://openalex.org/I58200834 |
| authorships[3].institutions[1].ror | https://ror.org/01vjw4z39 |
| authorships[3].institutions[1].type | education |
| authorships[3].institutions[1].lineage | https://openalex.org/I58200834 |
| authorships[3].institutions[1].country_code | CN |
| authorships[3].institutions[1].display_name | Southern Medical University |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Junrui Li |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[4].author.id | https://openalex.org/A5103043923 |
| authorships[4].author.orcid | https://orcid.org/0000-0003-2711-7519 |
| authorships[4].author.display_name | Nan He |
| authorships[4].countries | CN |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I58200834 |
| authorships[4].affiliations[0].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[4].institutions[0].id | https://openalex.org/I58200834 |
| authorships[4].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[4].institutions[0].country_code | CN |
| authorships[4].institutions[0].display_name | Southern Medical University |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Nan He |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[5].author.id | https://openalex.org/A5100351382 |
| authorships[5].author.orcid | https://orcid.org/0000-0002-1218-2804 |
| authorships[5].author.display_name | Ming Li |
| authorships[5].countries | CN |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I58200834 |
| authorships[5].affiliations[0].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[5].institutions[0].id | https://openalex.org/I58200834 |
| authorships[5].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[5].institutions[0].country_code | CN |
| authorships[5].institutions[0].display_name | Southern Medical University |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Ming Li |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[6].author.id | https://openalex.org/A5086184788 |
| authorships[6].author.orcid | https://orcid.org/0000-0002-0022-320X |
| authorships[6].author.display_name | Thomas Hackl |
| authorships[6].countries | NL |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I169381384 |
| authorships[6].affiliations[0].raw_affiliation_string | Groningen Institute for Evolutionary Life Sciences, University of Groningen, 9700CC Groningen, the Netherlands. |
| authorships[6].institutions[0].id | https://openalex.org/I169381384 |
| authorships[6].institutions[0].ror | https://ror.org/012p63287 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I169381384 |
| authorships[6].institutions[0].country_code | NL |
| authorships[6].institutions[0].display_name | University of Groningen |
| authorships[6].author_position | middle |
| authorships[6].raw_author_name | Thomas Hackl |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | Groningen Institute for Evolutionary Life Sciences, University of Groningen, 9700CC Groningen, the Netherlands. |
| authorships[7].author.id | https://openalex.org/A5028153158 |
| authorships[7].author.orcid | https://orcid.org/0000-0002-7402-6372 |
| authorships[7].author.display_name | Rui Wang |
| authorships[7].countries | CN |
| authorships[7].affiliations[0].institution_ids | https://openalex.org/I58200834 |
| authorships[7].affiliations[0].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[7].institutions[0].id | https://openalex.org/I58200834 |
| authorships[7].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[7].institutions[0].type | education |
| authorships[7].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[7].institutions[0].country_code | CN |
| authorships[7].institutions[0].display_name | Southern Medical University |
| authorships[7].author_position | middle |
| authorships[7].raw_author_name | Rui Wang |
| authorships[7].is_corresponding | False |
| authorships[7].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[8].author.id | https://openalex.org/A5006442888 |
| authorships[8].author.orcid | https://orcid.org/0000-0001-9724-8325 |
| authorships[8].author.display_name | Dongqiang Zeng |
| authorships[8].countries | CN |
| authorships[8].affiliations[0].institution_ids | https://openalex.org/I4210103346, https://openalex.org/I58200834 |
| authorships[8].affiliations[0].raw_affiliation_string | Department of Oncology, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[8].institutions[0].id | https://openalex.org/I4210103346 |
| authorships[8].institutions[0].ror | https://ror.org/01eq10738 |
| authorships[8].institutions[0].type | healthcare |
| authorships[8].institutions[0].lineage | https://openalex.org/I4210103346 |
| authorships[8].institutions[0].country_code | CN |
| authorships[8].institutions[0].display_name | Nanfang Hospital |
| authorships[8].institutions[1].id | https://openalex.org/I58200834 |
| authorships[8].institutions[1].ror | https://ror.org/01vjw4z39 |
| authorships[8].institutions[1].type | education |
| authorships[8].institutions[1].lineage | https://openalex.org/I58200834 |
| authorships[8].institutions[1].country_code | CN |
| authorships[8].institutions[1].display_name | Southern Medical University |
| authorships[8].author_position | middle |
| authorships[8].raw_author_name | Dongqiang Zeng |
| authorships[8].is_corresponding | False |
| authorships[8].raw_affiliation_strings | Department of Oncology, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[9].author.id | https://openalex.org/A5058162132 |
| authorships[9].author.orcid | https://orcid.org/0000-0001-9855-7357 |
| authorships[9].author.display_name | Shixiang Wang |
| authorships[9].countries | CN |
| authorships[9].affiliations[0].institution_ids | https://openalex.org/I139660479 |
| authorships[9].affiliations[0].raw_affiliation_string | Department of Biomedical Informatics, School of Life Sciences, Central South University, Changsha, China. |
| authorships[9].institutions[0].id | https://openalex.org/I139660479 |
| authorships[9].institutions[0].ror | https://ror.org/00f1zfq44 |
| authorships[9].institutions[0].type | education |
| authorships[9].institutions[0].lineage | https://openalex.org/I139660479 |
| authorships[9].institutions[0].country_code | CN |
| authorships[9].institutions[0].display_name | Central South University |
| authorships[9].author_position | middle |
| authorships[9].raw_author_name | Shixiang Wang |
| authorships[9].is_corresponding | False |
| authorships[9].raw_affiliation_strings | Department of Biomedical Informatics, School of Life Sciences, Central South University, Changsha, China. |
| authorships[10].author.id | https://openalex.org/A5018605078 |
| authorships[10].author.orcid | https://orcid.org/0009-0006-3229-3700 |
| authorships[10].author.display_name | Shensuo Li |
| authorships[10].countries | CN |
| authorships[10].affiliations[0].institution_ids | https://openalex.org/I24185976, https://openalex.org/I4391768003 |
| authorships[10].affiliations[0].raw_affiliation_string | West China School of Public Health and West China Fourth Hospital, and State Key Laboratory of Biotherapy, Sichuan University, Chengdu, China. |
| authorships[10].institutions[0].id | https://openalex.org/I4391768003 |
| authorships[10].institutions[0].ror | https://ror.org/00x43yy22 |
| authorships[10].institutions[0].type | facility |
| authorships[10].institutions[0].lineage | https://openalex.org/I24185976, https://openalex.org/I4391768003 |
| authorships[10].institutions[0].country_code | |
| authorships[10].institutions[0].display_name | State Key Laboratory of Biotherapy |
| authorships[10].institutions[1].id | https://openalex.org/I24185976 |
| authorships[10].institutions[1].ror | https://ror.org/011ashp19 |
| authorships[10].institutions[1].type | education |
| authorships[10].institutions[1].lineage | https://openalex.org/I24185976 |
| authorships[10].institutions[1].country_code | CN |
| authorships[10].institutions[1].display_name | Sichuan University |
| authorships[10].author_position | middle |
| authorships[10].raw_author_name | Shensuo Li |
| authorships[10].is_corresponding | False |
| authorships[10].raw_affiliation_strings | West China School of Public Health and West China Fourth Hospital, and State Key Laboratory of Biotherapy, Sichuan University, Chengdu, China. |
| authorships[11].author.id | https://openalex.org/A5008950262 |
| authorships[11].author.orcid | https://orcid.org/0000-0002-1445-7939 |
| authorships[11].author.display_name | Chunhui Gao |
| authorships[11].countries | CN |
| authorships[11].affiliations[0].institution_ids | https://openalex.org/I204823248 |
| authorships[11].affiliations[0].raw_affiliation_string | National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China. |
| authorships[11].institutions[0].id | https://openalex.org/I204823248 |
| authorships[11].institutions[0].ror | https://ror.org/023b72294 |
| authorships[11].institutions[0].type | education |
| authorships[11].institutions[0].lineage | https://openalex.org/I204823248 |
| authorships[11].institutions[0].country_code | CN |
| authorships[11].institutions[0].display_name | Huazhong Agricultural University |
| authorships[11].author_position | middle |
| authorships[11].raw_author_name | Chun-Hui Gao |
| authorships[11].is_corresponding | False |
| authorships[11].raw_affiliation_strings | National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China. |
| authorships[12].author.id | https://openalex.org/A5014705738 |
| authorships[12].author.orcid | https://orcid.org/0000-0002-4316-1192 |
| authorships[12].author.display_name | Lang Zhou |
| authorships[12].countries | CN |
| authorships[12].affiliations[0].institution_ids | https://openalex.org/I4210120929, https://openalex.org/I58200834 |
| authorships[12].affiliations[0].raw_affiliation_string | Division of Laboratory Medicine, Microbiome Medicine Center, Zhujiang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[12].institutions[0].id | https://openalex.org/I58200834 |
| authorships[12].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[12].institutions[0].type | education |
| authorships[12].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[12].institutions[0].country_code | CN |
| authorships[12].institutions[0].display_name | Southern Medical University |
| authorships[12].institutions[1].id | https://openalex.org/I4210120929 |
| authorships[12].institutions[1].ror | https://ror.org/02mhxa927 |
| authorships[12].institutions[1].type | healthcare |
| authorships[12].institutions[1].lineage | https://openalex.org/I4210120929 |
| authorships[12].institutions[1].country_code | CN |
| authorships[12].institutions[1].display_name | Zhujiang Hospital |
| authorships[12].author_position | middle |
| authorships[12].raw_author_name | Lang Zhou |
| authorships[12].is_corresponding | False |
| authorships[12].raw_affiliation_strings | Division of Laboratory Medicine, Microbiome Medicine Center, Zhujiang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[13].author.id | https://openalex.org/A5046756352 |
| authorships[13].author.orcid | https://orcid.org/0000-0003-0291-8600 |
| authorships[13].author.display_name | Silin Tao |
| authorships[13].countries | CN |
| authorships[13].affiliations[0].institution_ids | https://openalex.org/I4210098361, https://openalex.org/I92039509 |
| authorships[13].affiliations[0].raw_affiliation_string | Nephrology Department of the First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China. |
| authorships[13].institutions[0].id | https://openalex.org/I4210098361 |
| authorships[13].institutions[0].ror | https://ror.org/00z0j0d77 |
| authorships[13].institutions[0].type | healthcare |
| authorships[13].institutions[0].lineage | https://openalex.org/I4210098361 |
| authorships[13].institutions[0].country_code | CN |
| authorships[13].institutions[0].display_name | First Affiliated Hospital of Guangzhou Medical University |
| authorships[13].institutions[1].id | https://openalex.org/I92039509 |
| authorships[13].institutions[1].ror | https://ror.org/00zat6v61 |
| authorships[13].institutions[1].type | education |
| authorships[13].institutions[1].lineage | https://openalex.org/I92039509 |
| authorships[13].institutions[1].country_code | CN |
| authorships[13].institutions[1].display_name | Guangzhou Medical University |
| authorships[13].author_position | middle |
| authorships[13].raw_author_name | Shaoguo Tao |
| authorships[13].is_corresponding | False |
| authorships[13].raw_affiliation_strings | Nephrology Department of the First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China. |
| authorships[14].author.id | https://openalex.org/A5031107640 |
| authorships[14].author.orcid | |
| authorships[14].author.display_name | Zijing Xie |
| authorships[14].countries | CN |
| authorships[14].affiliations[0].institution_ids | https://openalex.org/I58200834 |
| authorships[14].affiliations[0].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[14].institutions[0].id | https://openalex.org/I58200834 |
| authorships[14].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[14].institutions[0].type | education |
| authorships[14].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[14].institutions[0].country_code | CN |
| authorships[14].institutions[0].display_name | Southern Medical University |
| authorships[14].author_position | middle |
| authorships[14].raw_author_name | Zijing Xie |
| authorships[14].is_corresponding | False |
| authorships[14].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[15].author.id | https://openalex.org/A5101788522 |
| authorships[15].author.orcid | https://orcid.org/0009-0002-4047-8677 |
| authorships[15].author.display_name | Deng Lin |
| authorships[15].countries | CN |
| authorships[15].affiliations[0].institution_ids | https://openalex.org/I58200834 |
| authorships[15].affiliations[0].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[15].institutions[0].id | https://openalex.org/I58200834 |
| authorships[15].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[15].institutions[0].type | education |
| authorships[15].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[15].institutions[0].country_code | CN |
| authorships[15].institutions[0].display_name | Southern Medical University |
| authorships[15].author_position | middle |
| authorships[15].raw_author_name | Lin Deng |
| authorships[15].is_corresponding | False |
| authorships[15].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[16].author.id | https://openalex.org/A5027320896 |
| authorships[16].author.orcid | https://orcid.org/0000-0002-6485-8781 |
| authorships[16].author.display_name | Guangchuang Yu |
| authorships[16].countries | CN |
| authorships[16].affiliations[0].institution_ids | https://openalex.org/I58200834 |
| authorships[16].affiliations[0].raw_affiliation_string | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| authorships[16].institutions[0].id | https://openalex.org/I58200834 |
| authorships[16].institutions[0].ror | https://ror.org/01vjw4z39 |
| authorships[16].institutions[0].type | education |
| authorships[16].institutions[0].lineage | https://openalex.org/I58200834 |
| authorships[16].institutions[0].country_code | CN |
| authorships[16].institutions[0].display_name | Southern Medical University |
| authorships[16].author_position | last |
| authorships[16].raw_author_name | Guangchuang Yu |
| authorships[16].is_corresponding | False |
| authorships[16].raw_affiliation_strings | Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China. |
| has_content.pdf | False |
| has_content.grobid_xml | False |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://doi.org/10.1016/j.xinn.2025.100958 |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | aplot: Simplifying the creation of complex graphs to visualize associations across diverse data types |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10538 |
| primary_topic.field.id | https://openalex.org/fields/17 |
| primary_topic.field.display_name | Computer Science |
| primary_topic.score | 0.9797999858856201 |
| primary_topic.domain.id | https://openalex.org/domains/3 |
| primary_topic.domain.display_name | Physical Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1710 |
| primary_topic.subfield.display_name | Information Systems |
| primary_topic.display_name | Data Mining Algorithms and Applications |
| related_works | https://openalex.org/W4391375266, https://openalex.org/W2899084033, https://openalex.org/W2748952813, https://openalex.org/W2068608913, https://openalex.org/W2390279801, https://openalex.org/W4391913857, https://openalex.org/W2346931493, https://openalex.org/W2903996962, https://openalex.org/W4312076339, https://openalex.org/W2798726020 |
| cited_by_count | 3 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 3 |
| locations_count | 4 |
| best_oa_location.id | doi:10.1016/j.xinn.2025.100958 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S4210236180 |
| best_oa_location.source.issn | 2666-6758 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 2666-6758 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | The Innovation |
| best_oa_location.source.host_organization | https://openalex.org/P4310320990 |
| best_oa_location.source.host_organization_name | Elsevier BV |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310320990 |
| best_oa_location.source.host_organization_lineage_names | Elsevier BV |
| best_oa_location.license | |
| best_oa_location.pdf_url | |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | The Innovation |
| best_oa_location.landing_page_url | https://doi.org/10.1016/j.xinn.2025.100958 |
| primary_location.id | doi:10.1016/j.xinn.2025.100958 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S4210236180 |
| primary_location.source.issn | 2666-6758 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 2666-6758 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | The Innovation |
| primary_location.source.host_organization | https://openalex.org/P4310320990 |
| primary_location.source.host_organization_name | Elsevier BV |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310320990 |
| primary_location.source.host_organization_lineage_names | Elsevier BV |
| primary_location.license | |
| primary_location.pdf_url | |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | The Innovation |
| primary_location.landing_page_url | https://doi.org/10.1016/j.xinn.2025.100958 |
| publication_date | 2025-05-22 |
| publication_year | 2025 |
| referenced_works | https://openalex.org/W4382363003, https://openalex.org/W3009737049, https://openalex.org/W3121804420, https://openalex.org/W4289527519, https://openalex.org/W4387609987, https://openalex.org/W2898580681, https://openalex.org/W4404511387, https://openalex.org/W2010457001, https://openalex.org/W4390840197, https://openalex.org/W4307501395, https://openalex.org/W6849325122, https://openalex.org/W2896872272, https://openalex.org/W2952615074, https://openalex.org/W4400735087, https://openalex.org/W6797786779, https://openalex.org/W6873631004, https://openalex.org/W4318955149, https://openalex.org/W3175752499, https://openalex.org/W4403587119 |
| referenced_works_count | 19 |
| abstract_inverted_index.a | 38, 69, 126 |
| abstract_inverted_index.It | 73 |
| abstract_inverted_index.at | 122 |
| abstract_inverted_index.by | 58 |
| abstract_inverted_index.is | 3, 37, 103, 117 |
| abstract_inverted_index.of | 40, 92 |
| abstract_inverted_index.on | 120 |
| abstract_inverted_index.to | 43, 48, 61, 97 |
| abstract_inverted_index.The | 53, 115 |
| abstract_inverted_index.and | 10, 23, 65, 109, 133 |
| abstract_inverted_index.are | 26 |
| abstract_inverted_index.can | 20 |
| abstract_inverted_index.for | 5, 77, 83, 105, 112, 129 |
| abstract_inverted_index.not | 27 |
| abstract_inverted_index.the | 81, 90 |
| abstract_inverted_index.CRAN | 121 |
| abstract_inverted_index.This | 86 |
| abstract_inverted_index.data | 1, 131 |
| abstract_inverted_index.into | 68 |
| abstract_inverted_index.meet | 98 |
| abstract_inverted_index.need | 82 |
| abstract_inverted_index.that | 12, 25 |
| abstract_inverted_index.them | 67 |
| abstract_inverted_index.this | 57 |
| abstract_inverted_index.tool | 128 |
| abstract_inverted_index.when | 29 |
| abstract_inverted_index.ideal | 104 |
| abstract_inverted_index.might | 13 |
| abstract_inverted_index.there | 36 |
| abstract_inverted_index.tools | 42 |
| abstract_inverted_index.users | 60 |
| abstract_inverted_index.create | 49, 63 |
| abstract_inverted_index.freely | 118 |
| abstract_inverted_index.manual | 84 |
| abstract_inverted_index.needs. | 100 |
| abstract_inverted_index.remain | 15 |
| abstract_inverted_index.reveal | 21 |
| abstract_inverted_index.visual | 51 |
| abstract_inverted_index.Despite | 33 |
| abstract_inverted_index.combine | 45 |
| abstract_inverted_index.complex | 50, 93 |
| abstract_inverted_index.crucial | 4 |
| abstract_inverted_index.demand, | 35 |
| abstract_inverted_index.diverse | 46 |
| abstract_inverted_index.evident | 28 |
| abstract_inverted_index.figure. | 72 |
| abstract_inverted_index.general | 41 |
| abstract_inverted_index.hidden. | 16 |
| abstract_inverted_index.modular | 87 |
| abstract_inverted_index.package | 55, 116 |
| abstract_inverted_index.related | 18 |
| abstract_inverted_index.results | 111 |
| abstract_inverted_index.trends, | 9 |
| abstract_inverted_index.allowing | 59, 95 |
| abstract_inverted_index.approach | 88 |
| abstract_inverted_index.assemble | 66 |
| abstract_inverted_index.cohesive | 70 |
| abstract_inverted_index.creation | 91 |
| abstract_inverted_index.datasets | 31, 47, 76, 108 |
| abstract_inverted_index.enhanced | 130 |
| abstract_inverted_index.insights | 11 |
| abstract_inverted_index.offering | 124 |
| abstract_inverted_index.powerful | 127 |
| abstract_inverted_index.removing | 80 |
| abstract_inverted_index.reorders | 75 |
| abstract_inverted_index.shortage | 39 |
| abstract_inverted_index.specific | 99 |
| abstract_inverted_index.subplots | 64 |
| abstract_inverted_index.Effective | 0 |
| abstract_inverted_index.addresses | 56 |
| abstract_inverted_index.analyzing | 30 |
| abstract_inverted_index.available | 119 |
| abstract_inverted_index.composite | 71 |
| abstract_inverted_index.insights. | 114 |
| abstract_inverted_index.otherwise | 14 |
| abstract_inverted_index.patterns, | 8 |
| abstract_inverted_index.revealing | 7 |
| abstract_inverted_index.analytical | 110 |
| abstract_inverted_index.biological | 113 |
| abstract_inverted_index.coordinate | 78 |
| abstract_inverted_index.increasing | 34 |
| abstract_inverted_index.seamlessly | 44 |
| abstract_inverted_index.simplifies | 89 |
| abstract_inverted_index.workflows. | 135 |
| abstract_inverted_index.Integrating | 17 |
| abstract_inverted_index.adjustment. | 85 |
| abstract_inverted_index.exploration | 132 |
| abstract_inverted_index.integrating | 106 |
| abstract_inverted_index.multi-omics | 107 |
| abstract_inverted_index.researchers | 125 |
| abstract_inverted_index.separately. | 32 |
| abstract_inverted_index.versatility | 102 |
| abstract_inverted_index.visualizing | 134 |
| abstract_inverted_index.<i>aplot</i> | 54 |
| abstract_inverted_index.consistency, | 79 |
| abstract_inverted_index.correlations | 22 |
| abstract_inverted_index.researchers, | 6 |
| abstract_inverted_index.automatically | 74 |
| abstract_inverted_index.customization | 96 |
| abstract_inverted_index.independently | 62 |
| abstract_inverted_index.relationships | 24 |
| abstract_inverted_index.visualization | 2 |
| abstract_inverted_index.<i>Aplot</i>'s | 101 |
| abstract_inverted_index.visualizations | 19 |
| abstract_inverted_index.visualizations, | 94 |
| abstract_inverted_index.representations. | 52 |
| abstract_inverted_index.https://cran.r-project.org/package=aplot, | 123 |
| cited_by_percentile_year.max | 97 |
| cited_by_percentile_year.min | 96 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 17 |
| citation_normalized_percentile.value | 0.98651433 |
| citation_normalized_percentile.is_in_top_1_percent | True |
| citation_normalized_percentile.is_in_top_10_percent | True |