Application of High-Throughput Sequencing for Comprehensive Virome Profiling in Grapevines Shows Yellows in Iran Article Swipe
Zahra Gholampour
,
Mohammad Zakiaghl
,
Elisa Asquini
,
Mirko Moser
,
Valeria Gualandri
,
Mohsen Mehrvar
,
Azeddine Si‐Ammour
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.3390/v16020204
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.3390/v16020204
A comprehensive study on the whole spectrum of viruses and viroids in five Iranian grapevine cultivars was carried out using sRNA libraries prepared from phloem tissue. A comparison of two approaches to virus detection from sRNAome data indicated a significant difference in the results and performance of the aligners in viral genome reconstruction. The results showed a complex virome in terms of viral composition, abundance, and richness. Thirteen viruses and viroids were identified in five Iranian grapevine cultivars, among which the grapevine red blotch virus and grapevine satellite virus were detected for the first time in Iranian vineyards. Grapevine leafroll-associated virus 1 (GLRaV1) and grapevine fanleaf virus (GFLV) were highly dominant in the virome. However, their frequency and abundance were somewhat different among grapevine cultivars. The results revealed a mixed infection of GLRaV1/grapevine yellow speckle viroid 1 (GYSVd1) and GFLV/GYSVd1 in grapevines that exhibited yellows and vein banding. We also propose a threshold of 14% of complete reconstruction as an appropriate threshold for detection of grapevine viruses that can be used as indicators for reliable grapevine virome profiling or in quarantine stations and certification programs.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/v16020204
- https://www.mdpi.com/1999-4915/16/2/204/pdf?version=1706545322
- OA Status
- gold
- Cited By
- 5
- References
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- Related Works
- 10
- OpenAlex ID
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All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W4391309698Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.3390/v16020204Digital Object Identifier
- Title
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Application of High-Throughput Sequencing for Comprehensive Virome Profiling in Grapevines Shows Yellows in IranWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
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2024-01-29Full publication date if available
- Authors
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Zahra Gholampour, Mohammad Zakiaghl, Elisa Asquini, Mirko Moser, Valeria Gualandri, Mohsen Mehrvar, Azeddine Si‐AmmourList of authors in order
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https://doi.org/10.3390/v16020204Publisher landing page
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https://www.mdpi.com/1999-4915/16/2/204/pdf?version=1706545322Direct link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://www.mdpi.com/1999-4915/16/2/204/pdf?version=1706545322Direct OA link when available
- Concepts
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Human virome, Biology, Cultivar, Begomovirus, Plant virus, Virus, Virology, Genome, Botany, Genetics, GeneTop concepts (fields/topics) attached by OpenAlex
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5Total citation count in OpenAlex
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2025: 4, 2024: 1Per-year citation counts (last 5 years)
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79Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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