Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids Article Swipe
Paulina Martinez Palacios
,
Marie‐Pierre Jacquemot
,
Marion Tapie
,
Agnès Rousselet
,
Mamoudou Diop
,
Carine Remoué
,
Matthieu Falque
,
Andrew Lloyd
,
Eric Jenczewski
,
Gilles Lassalle
,
Anne‐Marie Chèvre
,
Christine Lelandais
,
Martín Crespi
,
Philippe Brabant
,
Johann Joets
,
Karine Alix
·
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1093/molbev/msz007
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1093/molbev/msz007
Allopolyploidy, combining interspecific hybridization with whole genome duplication, has had significant impact on plant evolution. Its evolutionary success is related to the rapid and profound genome reorganizations that allow neoallopolyploids to form and adapt. Nevertheless, how neoallopolyploid genomes adapt to regulate their expression remains poorly understood. The hypothesis of a major role for small noncoding RNAs (sRNAs) in mediating the transcriptional response of neoallopolyploid genomes has progressively emerged. Generally, 21-nt sRNAs mediate posttranscriptional gene silencing by mRNA cleavage, whereas 24-nt sRNAs repress transcription (transcriptional gene silencing) through epigenetic modifications. Here, we characterize the global response of sRNAs to allopolyploidy in Brassica, using three independently resynthesized Brassica napus allotetraploids originating from crosses between diploid Brassica oleracea and Brassica rapa accessions, surveyed at two different generations in comparison with their diploid progenitors. Our results suggest an immediate but transient response of specific sRNA populations to allopolyploidy. These sRNA populations mainly target noncoding components of the genome but also target the transcriptional regulation of genes involved in response to stresses and in metabolism; this suggests a broad role in adapting to allopolyploidy. We finally identify the early accumulation of both 21- and 24-nt sRNAs involved in regulating the same targets, supporting a posttranscriptional gene silencing to transcriptional gene silencing shift at the first stages of the neoallopolyploid formation. We propose that reorganization of sRNA production is an early response to allopolyploidy in order to control the transcriptional reactivation of various noncoding elements and stress-related genes, thus ensuring genome stability during the first steps of neoallopolyploid formation.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/molbev/msz007
- https://academic.oup.com/mbe/article-pdf/36/4/709/28264244/msz007.pdf
- OA Status
- hybrid
- Cited By
- 25
- References
- 65
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2950721876
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W2950721876Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/molbev/msz007Digital Object Identifier
- Title
-
Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus AllotetraploidsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2019Year of publication
- Publication date
-
2019-01-08Full publication date if available
- Authors
-
Paulina Martinez Palacios, Marie‐Pierre Jacquemot, Marion Tapie, Agnès Rousselet, Mamoudou Diop, Carine Remoué, Matthieu Falque, Andrew Lloyd, Eric Jenczewski, Gilles Lassalle, Anne‐Marie Chèvre, Christine Lelandais, Martín Crespi, Philippe Brabant, Johann Joets, Karine AlixList of authors in order
- Landing page
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https://doi.org/10.1093/molbev/msz007Publisher landing page
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https://academic.oup.com/mbe/article-pdf/36/4/709/28264244/msz007.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
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hybridOpen access status per OpenAlex
- OA URL
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https://academic.oup.com/mbe/article-pdf/36/4/709/28264244/msz007.pdfDirect OA link when available
- Concepts
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Biology, Genetics, Genome, Gene, Brassica rapa, Regulation of gene expression, Gene duplication, Gene silencingTop concepts (fields/topics) attached by OpenAlex
- Cited by
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25Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 2, 2024: 5, 2023: 5, 2022: 4, 2021: 2Per-year citation counts (last 5 years)
- References (count)
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65Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| referenced_works | https://openalex.org/W2092947277, https://openalex.org/W2086477517, https://openalex.org/W2734942911, https://openalex.org/W2041009366, https://openalex.org/W2122135986, https://openalex.org/W1980198004, https://openalex.org/W2146831999, https://openalex.org/W2052367501, https://openalex.org/W2166574880, https://openalex.org/W1974964336, https://openalex.org/W2487078752, https://openalex.org/W2064401365, https://openalex.org/W2164034811, https://openalex.org/W2075827435, https://openalex.org/W2014094496, https://openalex.org/W2951004599, https://openalex.org/W2137257434, https://openalex.org/W2158381555, https://openalex.org/W2054764210, https://openalex.org/W2099312080, https://openalex.org/W2125905600, https://openalex.org/W2136961914, https://openalex.org/W2132829455, https://openalex.org/W2001374342, https://openalex.org/W2091993575, https://openalex.org/W2120423699, https://openalex.org/W2077327925, https://openalex.org/W2093854252, https://openalex.org/W2045843097, https://openalex.org/W2170551349, https://openalex.org/W2145511566, https://openalex.org/W2075960038, https://openalex.org/W2147801452, https://openalex.org/W2765081400, https://openalex.org/W2149429041, https://openalex.org/W1914616932, https://openalex.org/W2030049616, https://openalex.org/W2168803371, https://openalex.org/W1980998270, https://openalex.org/W2068847708, https://openalex.org/W2014299430, https://openalex.org/W2039315563, https://openalex.org/W2116424150, https://openalex.org/W2025208164, https://openalex.org/W2130274188, https://openalex.org/W1965368044, https://openalex.org/W2066102922, https://openalex.org/W2169416219, https://openalex.org/W2040528706, https://openalex.org/W2136309995, https://openalex.org/W2127699338, https://openalex.org/W2083172540, https://openalex.org/W2033713984, https://openalex.org/W1902758080, https://openalex.org/W2124192244, https://openalex.org/W2056558781, https://openalex.org/W2274887176, https://openalex.org/W334839370, https://openalex.org/W1969353942, https://openalex.org/W2045738499, https://openalex.org/W1577577364, https://openalex.org/W2135015580, https://openalex.org/W2141550398, https://openalex.org/W2059864757, https://openalex.org/W2887859127 |
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