Assessment of the R2R3 MYB gene expression profile during tomato fruit development using in silico analysis, quantitative and semi-quantitative RT-PCR Article Swipe
Abdallah A. Hassanin
,
Ahmed S. Eldomiaty
,
Javed Ahmed Ujjan
,
Amina A. M. Al-Mushhin
,
Ayshah Aysh ALrashidi
,
Ahmed M. Saad
,
Haifa A. S. Alhaithloul
,
Mohamed T. El‐Saadony
,
Mohamed F. Awad
,
Mahmoud Sitohy
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1016/j.sjbs.2022.02.021
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1016/j.sjbs.2022.02.021
Assessment of gene expression is an essential and sensitive indicator of the biological activity and function of a certain gene. The expression profile of R2R3 MYB gene (Solyc02g067760) was investigated at ten development stages of tomato fruits (Lycopersicon esculentum) of Micro-Tom cultivar using three different approaches; quantitative RT-PCR, semi-quantitative RT-PCR and the promising Tomato Expression Atlas (TEA) bioinformatics tool. RNA was extracted from fruit tissues and used for synthesizing cDNA. Quantitative and semi-quantitative expression analyses of R2R3 MYB gene using specific primers consistently showed different expression patterns at the different development stages of tomato fruit. R2R3 MYB exhibited maximum expression at the anthesis stage, suggesting its potential involvement in the pollination and fruit set process. The gene expression was drastically reduced in all other studied stages after anthesis. In the same context, spatiotemporal expression of R2R3 MYB during the ten development stages of tomato fruit using TEA bioinformatics tool revealed a similar expression profile to that obtained by qRT-PCR and semi-qRT-PCR. Comparable results of the three approaches provide new insights into the assessment of tomato gene expression profiling in the presence of Actin gene (Solyc04g011500) as a normalizing expression reference. The obtained results confirm the potentially essential role of the R2R3 MYB in fruit set leading the future research into exploring techniques and stratify of overexpressing this gene in the relevant economic crops.
Related Topics
Concepts
MYB
Biology
Gene expression
Gene
Lycopersicon
Real-time polymerase chain reaction
Gene expression profiling
Anthesis
Context (archaeology)
Genetics
Botany
Cultivar
Paleontology
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1016/j.sjbs.2022.02.021
- OA Status
- hybrid
- Cited By
- 6
- References
- 45
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4213360425
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4213360425Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1016/j.sjbs.2022.02.021Digital Object Identifier
- Title
-
Assessment of the R2R3 MYB gene expression profile during tomato fruit development using in silico analysis, quantitative and semi-quantitative RT-PCRWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-02-01Full publication date if available
- Authors
-
Abdallah A. Hassanin, Ahmed S. Eldomiaty, Javed Ahmed Ujjan, Amina A. M. Al-Mushhin, Ayshah Aysh ALrashidi, Ahmed M. Saad, Haifa A. S. Alhaithloul, Mohamed T. El‐Saadony, Mohamed F. Awad, Mahmoud SitohyList of authors in order
- Landing page
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https://doi.org/10.1016/j.sjbs.2022.02.021Publisher landing page
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YesWhether a free full text is available
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hybridOpen access status per OpenAlex
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https://doi.org/10.1016/j.sjbs.2022.02.021Direct OA link when available
- Concepts
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MYB, Biology, Gene expression, Gene, Lycopersicon, Real-time polymerase chain reaction, Gene expression profiling, Anthesis, Context (archaeology), Genetics, Botany, Cultivar, PaleontologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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6Total citation count in OpenAlex
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2024: 2, 2023: 1, 2022: 3Per-year citation counts (last 5 years)
- References (count)
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45Number of works referenced by this work
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-
10Other works algorithmically related by OpenAlex
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