AutDB: a platform to decode the genetic architecture of autism Article Swipe
Wayne Pereanu
,
Eric Larsen
,
Ishita Das
,
Marcel A. Estévez
,
Anjali A. Sarkar
,
Senanu Spring-Pearson
,
Ravi Kollu
,
Saumyendra N. Basu
,
Sharmila Banerjee‐Basu
·
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.1093/nar/gkx1093
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.1093/nar/gkx1093
AutDB is a deeply annotated resource for exploring the impact of genetic variations associated with autism spectrum disorders (ASD). First released in 2007, AutDB has evolved into a multi-modular resource of diverse types of genetic and functional evidence related to ASD. Current modules include: Human Gene, which annotates all ASD-linked genes and their variants; Animal Model, which catalogs behavioral, anatomical and physiological data from rodent models of ASD; Protein Interaction (PIN), which builds interactomes from direct relationships of protein products of ASD genes; and Copy Number Variant (CNV), which catalogs deletions and duplications of chromosomal loci identified in ASD. A multilevel data-integration strategy is utilized to connect the ASD genes to the components of the other modules. All information in this resource is manually curated by expert scientists from primary scientific publications and is referenced to source articles. AutDB is actively maintained with a rigorous quarterly data release schedule. As of June 2017, AutDB contains detailed annotations for 910 genes, 2197 CNV loci, 1060 rodent models and 38 296 PINs. With its widespread use by the research community, AutDB serves as a reference resource for analysis of large datasets, accelerating ASD research and potentially leading to targeted drug treatments. AutDB is available at http://autism.mindspec.org/autdb/Welcome.do.
Related Topics
Concepts
Biology
Autism
Computational biology
Resource (disambiguation)
Gene
Genetics
Autism spectrum disorder
Copy-number variation
Schedule
Genetic architecture
Modular design
Genome
Computer science
Phenotype
Psychology
Developmental psychology
Computer network
Operating system
Metadata
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- Language
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- Landing Page
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- https://academic.oup.com/nar/article-pdf/46/D1/D1049/23162301/gkx1093.pdf
- OA Status
- gold
- Cited By
- 49
- References
- 19
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2769432793
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2769432793Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/nar/gkx1093Digital Object Identifier
- Title
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AutDB: a platform to decode the genetic architecture of autismWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2017Year of publication
- Publication date
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2017-11-23Full publication date if available
- Authors
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Wayne Pereanu, Eric Larsen, Ishita Das, Marcel A. Estévez, Anjali A. Sarkar, Senanu Spring-Pearson, Ravi Kollu, Saumyendra N. Basu, Sharmila Banerjee‐BasuList of authors in order
- Landing page
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https://doi.org/10.1093/nar/gkx1093Publisher landing page
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https://academic.oup.com/nar/article-pdf/46/D1/D1049/23162301/gkx1093.pdfDirect link to full text PDF
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YesWhether a free full text is available
- OA status
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goldOpen access status per OpenAlex
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https://academic.oup.com/nar/article-pdf/46/D1/D1049/23162301/gkx1093.pdfDirect OA link when available
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Biology, Autism, Computational biology, Resource (disambiguation), Gene, Genetics, Autism spectrum disorder, Copy-number variation, Schedule, Genetic architecture, Modular design, Genome, Computer science, Phenotype, Psychology, Developmental psychology, Computer network, Operating systemTop concepts (fields/topics) attached by OpenAlex
- Cited by
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49Total citation count in OpenAlex
- Citations by year (recent)
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2025: 4, 2024: 6, 2023: 9, 2022: 3, 2021: 10Per-year citation counts (last 5 years)
- References (count)
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19Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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