Automated design of 3D DNA origami with non-rasterized 2D curvature Article Swipe
Daniel Fu
,
Raghu Pradeep Narayanan
,
Abhay Prasad
,
Fei Zhang
,
Dewight Williams
,
John S. Schreck
,
Hao Yan
,
John H. Reif
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1126/sciadv.ade4455
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1126/sciadv.ade4455
Improving the precision and function of encapsulating three-dimensional (3D) DNA nanostructures via curved geometries could have transformative impacts on areas such as molecular transport, drug delivery, and nanofabrication. However, the addition of non-rasterized curvature escalates design complexity without algorithmic regularity, and these challenges have limited the ad hoc development and usage of previously unknown shapes. In this work, we develop and automate the application of a set of previously unknown design principles that now includes a multilayer design for closed and curved DNA nanostructures to resolve past obstacles in shape selection, yield, mechanical rigidity, and accessibility. We design, analyze, and experimentally demonstrate a set of diverse 3D curved nanoarchitectures, showing planar asymmetry and examining partial multilayer designs. Our automated design tool implements a combined algorithmic and numerical approximation strategy for scaffold routing and crossover placement, which may enable wider applications of general DNA nanostructure design for nonregular or oblique shapes.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1126/sciadv.ade4455
- OA Status
- gold
- Cited By
- 22
- References
- 66
- Related Works
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- OpenAlex ID
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All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4312179032Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1126/sciadv.ade4455Digital Object Identifier
- Title
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Automated design of 3D DNA origami with non-rasterized 2D curvatureWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-12-23Full publication date if available
- Authors
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Daniel Fu, Raghu Pradeep Narayanan, Abhay Prasad, Fei Zhang, Dewight Williams, John S. Schreck, Hao Yan, John H. ReifList of authors in order
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https://doi.org/10.1126/sciadv.ade4455Publisher landing page
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YesWhether a free full text is available
- OA status
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goldOpen access status per OpenAlex
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https://doi.org/10.1126/sciadv.ade4455Direct OA link when available
- Concepts
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Computer science, DNA origami, Curvature, Crossover, Nanostructure, Nanotechnology, Algorithm, Materials science, Artificial intelligence, Mathematics, GeometryTop concepts (fields/topics) attached by OpenAlex
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22Total citation count in OpenAlex
- Citations by year (recent)
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2025: 9, 2024: 8, 2023: 5Per-year citation counts (last 5 years)
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66Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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