BANNMDA: a computational model for predicting potential microbe–drug associations based on bilinear attention networks and nuclear norm minimization Article Swipe
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· 2025
· Open Access
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· DOI: https://doi.org/10.3389/fmicb.2024.1497886
Introduction Predicting potential associations between microbes and drugs is crucial for advancing pharmaceutical research and development. In this manuscript, we introduced an innovative computational model named BANNMDA by integrating Bilinear Attention Networks(BAN) with the Nuclear Norm Minimization (NNM) to uncover hidden connections between microbes and drugs. Methods In BANNMDA, we initially constructed a heterogeneous microbe-drug network by combining multiple drug and microbe similarity metrics with known microbe-drug relationships. Subsequently, we applied both BAN and NNM to compute predicted scores of potential microbe-drug associations. Finally, we implemented 5-fold cross-validation frameworks to evaluate the prediction performance of BANNMDA. Results and discussion The experimental results indicated that BANNMDA outperformed state-of-the-art competitive methods. We conducted case studies on well-known drugs such as the Amoxicillin and Ceftazidime, as well as on pathogens such as Bacillus cereus and Influenza A virus, to further evaluate the efficacy of BANNMDA, and experimental outcomes showed that there were 9 out of the top 10 predicted drugs, along with 8 and 9 out of the top 10 predicted microbes having been corroborated by relevant literatures. These findings underscored the capability of BANNMDA to achieve commendable predictive accuracy.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3389/fmicb.2024.1497886
- https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1497886/pdf
- OA Status
- gold
- Cited By
- 1
- References
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- Related Works
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- OpenAlex ID
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https://openalex.org/W4406716619Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.3389/fmicb.2024.1497886Digital Object Identifier
- Title
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BANNMDA: a computational model for predicting potential microbe–drug associations based on bilinear attention networks and nuclear norm minimizationWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
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2025-01-22Full publication date if available
- Authors
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Mingmin Liang, Xianzhi Liu, Juncai Li, Qijia Chen, Bin Zeng, Zhong Wang, Jing Li, Lei WangList of authors in order
- Landing page
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https://doi.org/10.3389/fmicb.2024.1497886Publisher landing page
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https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1497886/pdfDirect link to full text PDF
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goldOpen access status per OpenAlex
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https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1497886/pdfDirect OA link when available
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Drug, Bilinear interpolation, Computer science, Norm (philosophy), Machine learning, Computational biology, Artificial intelligence, Biochemical engineering, Biology, Pharmacology, Engineering, Political science, Law, Computer visionTop concepts (fields/topics) attached by OpenAlex
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1Total citation count in OpenAlex
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2025: 1Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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