bedsFromBAMsForGEO.zip Article Swipe
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Benjamin P. Berman
,
Efrat Katsman
,
Filippo Martignano
,
Silvestro G. Conticello
,
Shari Orlanski
·
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.6084/m9.figshare.16822996
· OA: W4394137754
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.6084/m9.figshare.16822996
· OA: W4394137754
Filtering of alignments for ichorCNA and fragmentomic analysis. Samtools (Version 1.9) was used to filter BAM alignments, unmapped reads, secondary and supplementary reads, reads with Minimap2 mapping quality less than 20 as in https://doi.org/10.1101/2020.12.28.424602, and reads longer than 700bp. Bedtobam was used to create bed files. All genomic coordinates are in GRCh38.
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