Biphasic inflammation control by dedifferentiated fibroblasts enables axon regeneration after spinal cord injury in zebrafish Article Swipe
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· 2025
· Open Access
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· DOI: https://doi.org/10.1101/2025.01.27.635043
Fibrosis and persistent inflammation are interconnected processes that inhibit axon regeneration in the mammalian central nervous system (CNS). In zebrafish, by contrast, fibroblast-derived extracellular matrix deposition and inflammation facilitate regeneration. However, the regulatory cross-talk between fibroblasts and the innate immune system in the regenerating CNS is not understood. Here, we show that zebrafish fibroblasts possess a dual role in inducing and subsequently resolving inflammation, which are both essential for regeneration. We identify a transient, injury-specific cthrc1a + fibroblast state with an inflammation-associated, less differentiated, and non-fibrotic profile. Induction of this fibroblast state precedes and contributes to the initiation of the inflammatory response. At the peak of neutrophil influx, cthrc1a + fibroblasts coordinate the resolution of inflammation. Disruption of these inflammation dynamics inhibits axon regeneration and alters the mechano-structural properties of the lesion environment. This establishes the biphasic inflammation control by dedifferentiated fibroblasts as a pivotal mechanism for CNS regeneration. ONE SENTENCE SUMMARY Dedifferentiated fibroblasts sequentially induce and resolve neutrophil-driven inflammation through cytokine release to facilitate axon regeneration after spinal cord injury in zebrafish. HIGHLIGHTS Time-resolved single-cell transcriptomics of zebrafish spinal cord regeneration. Spinal cord injury induces fibroblast dedifferentiation. Dedifferentiated fibroblasts sequentially induce and resolve inflammation. Dysregulation of inflammation dynamics alters mechano-structural tissue properties.
Related Topics
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2025.01.27.635043
- OA Status
- green
- Cited By
- 1
- References
- 158
- Related Works
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- OpenAlex ID
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Raw OpenAlex JSON
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https://openalex.org/W4406856042Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2025.01.27.635043Digital Object Identifier
- Title
-
Biphasic inflammation control by dedifferentiated fibroblasts enables axon regeneration after spinal cord injury in zebrafishWork title
- Type
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preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2025Year of publication
- Publication date
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2025-01-27Full publication date if available
- Authors
-
Nora John, Thomas Fleming, Julia Kolb, Olga Lyraki, Sebastián Vásquez-Sepúlveda, Asha Parmar, Kyoohyun Kim, Maria Tarczewska, Kanwarpal Singh, Fédérico Marini, Sumeet Pal Singh, Sven Falk, Kristian Franze, Jochen Guck, Daniel WehnerList of authors in order
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https://doi.org/10.1101/2025.01.27.635043Publisher landing page
- Open access
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YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://doi.org/10.1101/2025.01.27.635043Direct OA link when available
- Concepts
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Zebrafish, Regeneration (biology), Axon, Spinal cord injury, Spinal cord, Inflammation, Cell biology, Neuroscience, Biology, Anatomy, Immunology, Gene, BiochemistryTop concepts (fields/topics) attached by OpenAlex
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1Total citation count in OpenAlex
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2025: 1Per-year citation counts (last 5 years)
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158Number of works referenced by this work
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-
10Other works algorithmically related by OpenAlex
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https://openalex.org/W1976342995, https://openalex.org/W2469608859, https://openalex.org/W3047048129, https://openalex.org/W3029242248, https://openalex.org/W2084544258, https://openalex.org/W1942817236, https://openalex.org/W1515429739, https://openalex.org/W4306410088, https://openalex.org/W4387893459, https://openalex.org/W2482213414, https://openalex.org/W2022287530, https://openalex.org/W3020031087, https://openalex.org/W4214876469, https://openalex.org/W3184368135, https://openalex.org/W2735527928, https://openalex.org/W2020179710, https://openalex.org/W2076970838, https://openalex.org/W2749030702, https://openalex.org/W2163078748, https://openalex.org/W4384283376, https://openalex.org/W2050195517, https://openalex.org/W4392200139, https://openalex.org/W4399128712, https://openalex.org/W4388449332, https://openalex.org/W2997366069, https://openalex.org/W4321178799, https://openalex.org/W2791934195, https://openalex.org/W3004727732, https://openalex.org/W1995943364, https://openalex.org/W2197934318, https://openalex.org/W2122019197, https://openalex.org/W2052107807, https://openalex.org/W2143918856, https://openalex.org/W1898569975, https://openalex.org/W2618936142, https://openalex.org/W2145337609, https://openalex.org/W2004228917, https://openalex.org/W1978054881, https://openalex.org/W4391439527, https://openalex.org/W2974913556, https://openalex.org/W4283272658, https://openalex.org/W4395111187, https://openalex.org/W2078226647, https://openalex.org/W2952553905, https://openalex.org/W3038850427, https://openalex.org/W4388520401, https://openalex.org/W3016965350, https://openalex.org/W4400491625, https://openalex.org/W4400775564, https://openalex.org/W3163218521, https://openalex.org/W2553271046, https://openalex.org/W4391294365, https://openalex.org/W3144062749, https://openalex.org/W2069463594, https://openalex.org/W1999008171, https://openalex.org/W2133210319, https://openalex.org/W2396126130, https://openalex.org/W4402363246, https://openalex.org/W2051435181, https://openalex.org/W2932327961, https://openalex.org/W2972662355, https://openalex.org/W2294317040, https://openalex.org/W1972259766, https://openalex.org/W1992938999, https://openalex.org/W2099791270, https://openalex.org/W2883020540, https://openalex.org/W4283360355, https://openalex.org/W2563287190, https://openalex.org/W4388253017, https://openalex.org/W4206136446, https://openalex.org/W3120305566, https://openalex.org/W2945567049, https://openalex.org/W3081268457, https://openalex.org/W2951506174, https://openalex.org/W2800392236, https://openalex.org/W2817838603, https://openalex.org/W2967177832, https://openalex.org/W3047141442, https://openalex.org/W2103017472, https://openalex.org/W4323036511, https://openalex.org/W3209545809, https://openalex.org/W2332292689, https://openalex.org/W3157788241, https://openalex.org/W2952391626, https://openalex.org/W4372332501, https://openalex.org/W4384037787, https://openalex.org/W4210451761, 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| referenced_works_count | 158 |
| abstract_inverted_index.+ | 77, 110 |
| abstract_inverted_index.a | 56, 73, 144 |
| abstract_inverted_index.At | 103 |
| abstract_inverted_index.In | 19 |
| abstract_inverted_index.We | 71 |
| abstract_inverted_index.an | 81 |
| abstract_inverted_index.as | 143 |
| abstract_inverted_index.by | 21, 140 |
| abstract_inverted_index.in | 12, 42, 59, 172 |
| abstract_inverted_index.is | 46 |
| abstract_inverted_index.of | 89, 99, 106, 115, 118, 130, 178, 197 |
| abstract_inverted_index.to | 96, 164 |
| abstract_inverted_index.we | 50 |
| abstract_inverted_index.CNS | 45, 148 |
| abstract_inverted_index.ONE | 150 |
| abstract_inverted_index.and | 2, 27, 37, 61, 85, 94, 125, 157, 193 |
| abstract_inverted_index.are | 5, 66 |
| abstract_inverted_index.for | 69, 147 |
| abstract_inverted_index.not | 47 |
| abstract_inverted_index.the | 13, 32, 38, 43, 97, 100, 104, 113, 127, 131, 136 |
| abstract_inverted_index.This | 134 |
| abstract_inverted_index.axon | 10, 123, 166 |
| abstract_inverted_index.both | 67 |
| abstract_inverted_index.cord | 170, 181, 184 |
| abstract_inverted_index.dual | 57 |
| abstract_inverted_index.less | 83 |
| abstract_inverted_index.peak | 105 |
| abstract_inverted_index.role | 58 |
| abstract_inverted_index.show | 51 |
| abstract_inverted_index.that | 8, 52 |
| abstract_inverted_index.this | 90 |
| abstract_inverted_index.with | 80 |
| abstract_inverted_index.Here, | 49 |
| abstract_inverted_index.after | 168 |
| abstract_inverted_index.state | 79, 92 |
| abstract_inverted_index.these | 119 |
| abstract_inverted_index.which | 65 |
| abstract_inverted_index.(CNS). | 18 |
| abstract_inverted_index.Spinal | 183 |
| abstract_inverted_index.alters | 126, 200 |
| abstract_inverted_index.immune | 40 |
| abstract_inverted_index.induce | 156, 192 |
| abstract_inverted_index.injury | 171, 185 |
| abstract_inverted_index.innate | 39 |
| abstract_inverted_index.lesion | 132 |
| abstract_inverted_index.matrix | 25 |
| abstract_inverted_index.spinal | 169, 180 |
| abstract_inverted_index.system | 17, 41 |
| abstract_inverted_index.tissue | 202 |
| abstract_inverted_index.SUMMARY | 152 |
| abstract_inverted_index.between | 35 |
| abstract_inverted_index.central | 15 |
| abstract_inverted_index.control | 139 |
| abstract_inverted_index.cthrc1a | 76, 109 |
| abstract_inverted_index.induces | 186 |
| abstract_inverted_index.influx, | 108 |
| abstract_inverted_index.inhibit | 9 |
| abstract_inverted_index.nervous | 16 |
| abstract_inverted_index.pivotal | 145 |
| abstract_inverted_index.possess | 55 |
| abstract_inverted_index.release | 163 |
| abstract_inverted_index.resolve | 158, 194 |
| abstract_inverted_index.through | 161 |
| abstract_inverted_index.ABSTRACT | 0 |
| abstract_inverted_index.Fibrosis | 1 |
| abstract_inverted_index.However, | 31 |
| abstract_inverted_index.SENTENCE | 151 |
| abstract_inverted_index.biphasic | 137 |
| abstract_inverted_index.cytokine | 162 |
| abstract_inverted_index.dynamics | 121, 199 |
| abstract_inverted_index.identify | 72 |
| abstract_inverted_index.inducing | 60 |
| abstract_inverted_index.inhibits | 122 |
| abstract_inverted_index.precedes | 93 |
| abstract_inverted_index.profile. | 87 |
| abstract_inverted_index.Induction | 88 |
| abstract_inverted_index.contrast, | 22 |
| abstract_inverted_index.essential | 68 |
| abstract_inverted_index.mammalian | 14 |
| abstract_inverted_index.mechanism | 146 |
| abstract_inverted_index.processes | 7 |
| abstract_inverted_index.resolving | 63 |
| abstract_inverted_index.response. | 102 |
| abstract_inverted_index.zebrafish | 53, 179 |
| abstract_inverted_index.Disruption | 117 |
| abstract_inverted_index.HIGHLIGHTS | 174 |
| abstract_inverted_index.coordinate | 112 |
| abstract_inverted_index.cross-talk | 34 |
| abstract_inverted_index.deposition | 26 |
| abstract_inverted_index.facilitate | 29, 165 |
| abstract_inverted_index.fibroblast | 78, 91, 187 |
| abstract_inverted_index.initiation | 98 |
| abstract_inverted_index.neutrophil | 107 |
| abstract_inverted_index.persistent | 3 |
| abstract_inverted_index.properties | 129 |
| abstract_inverted_index.regulatory | 33 |
| abstract_inverted_index.resolution | 114 |
| abstract_inverted_index.transient, | 74 |
| abstract_inverted_index.zebrafish, | 20 |
| abstract_inverted_index.zebrafish. | 173 |
| abstract_inverted_index.contributes | 95 |
| abstract_inverted_index.establishes | 135 |
| abstract_inverted_index.fibroblasts | 36, 54, 111, 142, 154, 190 |
| abstract_inverted_index.properties. | 203 |
| abstract_inverted_index.single-cell | 176 |
| abstract_inverted_index.understood. | 48 |
| abstract_inverted_index.environment. | 133 |
| abstract_inverted_index.inflammation | 4, 28, 120, 138, 160, 198 |
| abstract_inverted_index.inflammatory | 101 |
| abstract_inverted_index.non-fibrotic | 86 |
| abstract_inverted_index.regenerating | 44 |
| abstract_inverted_index.regeneration | 11, 124, 167 |
| abstract_inverted_index.sequentially | 155, 191 |
| abstract_inverted_index.subsequently | 62 |
| abstract_inverted_index.Dysregulation | 196 |
| abstract_inverted_index.Time-resolved | 175 |
| abstract_inverted_index.extracellular | 24 |
| abstract_inverted_index.inflammation, | 64 |
| abstract_inverted_index.inflammation. | 116, 195 |
| abstract_inverted_index.regeneration. | 30, 70, 149, 182 |
| abstract_inverted_index.interconnected | 6 |
| abstract_inverted_index.differentiated, | 84 |
| abstract_inverted_index.injury-specific | 75 |
| abstract_inverted_index.transcriptomics | 177 |
| abstract_inverted_index.Dedifferentiated | 153, 189 |
| abstract_inverted_index.dedifferentiated | 141 |
| abstract_inverted_index.neutrophil-driven | 159 |
| abstract_inverted_index.dedifferentiation. | 188 |
| abstract_inverted_index.fibroblast-derived | 23 |
| abstract_inverted_index.mechano-structural | 128, 201 |
| abstract_inverted_index.inflammation-associated, | 82 |
| cited_by_percentile_year.max | 95 |
| cited_by_percentile_year.min | 91 |
| countries_distinct_count | 0 |
| institutions_distinct_count | 15 |
| citation_normalized_percentile.value | 0.75176346 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |