Boosting wheat functional genomics via an indexed EMS mutant library of KN9204 Article Swipe
Dongzhi Wang
,
Yongpeng Li
,
Haojie Wang
,
Yongxin Xu
,
Yiman Yang
,
Yuxin Zhou
,
Zhongxu Chen
,
Yuqing Zhou
,
Lixuan Gui
,
Yi Guo
,
Chunjiang Zhou
,
Wenqiang Tang
,
Shuzhi Zheng
,
Lei Wang
,
Guo Xiulin
,
Yingjun Zhang
,
Fa Cui
,
Xuelei Lin
,
Yuling Jiao
,
Yuehui He
,
Junming Li
,
Fei He
,
Xigang Liu
,
Jun Xiao
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1016/j.xplc.2023.100593
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1016/j.xplc.2023.100593
A better understanding of wheat functional genomics can improve targeted breeding for better agronomic traits and environmental adaptation. However, the lack of gene-indexed mutants and the low transformation efficiency of wheat limit in-depth gene functional studies and genetic manipulation for breeding. In this study, we created a library for KN9204, a popular wheat variety in northern China, with a reference genome, transcriptome, and epigenome of different tissues, using ethyl methyl sulfonate (EMS) mutagenesis. This library contains a vast developmental diversity of critical tissues and transition stages. Exome capture sequencing of 2090 mutant lines using KN9204 genome-designed probes revealed that 98.79% of coding genes had mutations, and each line had an average of 1383 EMS-type SNPs. We identified new allelic variations for crucial agronomic trait-related genes such as Rht-D1, Q, TaTB1, and WFZP. We tested 100 lines with severe mutations in 80 NAC transcription factors (TFs) under drought and salinity stress and identified 13 lines with altered sensitivity. Further analysis of three lines using transcriptome and chromatin accessibility data revealed hundreds of direct NAC targets with altered transcription patterns under salt or drought stress, including SNAC1, DREB2B, CML16, and ZFP182, factors known to respond to abiotic stress. Thus, we have generated and indexed a KN9204 EMS mutant library that can facilitate functional genomics research and offer resources for genetic manipulation of wheat.
Related Topics
Concepts
Biology
Genetics
Functional genomics
Genomics
Transcriptome
Gene
Genome
Abiotic stress
Computational biology
Gene expression
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1016/j.xplc.2023.100593
- OA Status
- gold
- Cited By
- 44
- References
- 87
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4328104235
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4328104235Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1016/j.xplc.2023.100593Digital Object Identifier
- Title
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Boosting wheat functional genomics via an indexed EMS mutant library of KN9204Work title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2023Year of publication
- Publication date
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2023-03-21Full publication date if available
- Authors
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Dongzhi Wang, Yongpeng Li, Haojie Wang, Yongxin Xu, Yiman Yang, Yuxin Zhou, Zhongxu Chen, Yuqing Zhou, Lixuan Gui, Yi Guo, Chunjiang Zhou, Wenqiang Tang, Shuzhi Zheng, Lei Wang, Guo Xiulin, Yingjun Zhang, Fa Cui, Xuelei Lin, Yuling Jiao, Yuehui He, Junming Li, Fei He, Xigang Liu, Jun XiaoList of authors in order
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https://doi.org/10.1016/j.xplc.2023.100593Publisher landing page
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://doi.org/10.1016/j.xplc.2023.100593Direct OA link when available
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Biology, Genetics, Functional genomics, Genomics, Transcriptome, Gene, Genome, Abiotic stress, Computational biology, Gene expressionTop concepts (fields/topics) attached by OpenAlex
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44Total citation count in OpenAlex
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2025: 21, 2024: 17, 2023: 5, 2022: 1Per-year citation counts (last 5 years)
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87Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.gene-indexed | 22 |
| abstract_inverted_index.manipulation | 38, 218 |
| abstract_inverted_index.mutagenesis. | 72 |
| abstract_inverted_index.sensitivity. | 156 |
| abstract_inverted_index.accessibility | 166 |
| abstract_inverted_index.developmental | 78 |
| abstract_inverted_index.environmental | 16 |
| abstract_inverted_index.trait-related | 123 |
| abstract_inverted_index.transcription | 142, 176 |
| abstract_inverted_index.transcriptome | 163 |
| abstract_inverted_index.understanding | 2 |
| abstract_inverted_index.transcriptome, | 61 |
| abstract_inverted_index.transformation | 27 |
| abstract_inverted_index.genome-designed | 95 |
| cited_by_percentile_year.max | 100 |
| cited_by_percentile_year.min | 89 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 24 |
| citation_normalized_percentile.value | 0.99242296 |
| citation_normalized_percentile.is_in_top_1_percent | True |
| citation_normalized_percentile.is_in_top_10_percent | True |