Building a local reference library for metabarcoding survey of lake macrobenthos: oligochaetes and chironomids from Lake Maggiore Article Swipe
Silvia Zaupa
,
Diego Fontaneto
,
Raffaella Sabatino
,
Angela Boggero
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.4081/aiol.2022.11051
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.4081/aiol.2022.11051
This study represents a first reference database of genetic diversity of macroinvertebrates for a barcoding marker for Lake Maggiore, focusing on the two dominant groups of the littoral benthic fauna (chironomids and oligochaetes), commonly used for biological monitoring of freshwater lakes. Sediment samples were sorted at the stereomicroscope and single animals were cut in two pieces, one piece to be used for morphological identification and one piece for DNA extraction. This study allowed us to collect and identify 427 organisms: 309 oligochaetes belonging to 27 identifiable taxa and 118 chironomid larvae belonging to 26 identifiable taxa. Four families of oligochaetes: Naididae, Lumbricidae, Lumbriculidae, and Enchytraeidae and five subfamilies of Chironomidae: Chironominae, Tanypodinae, Orthocladiinae, Diamesinae, and Prodiamesinae were found. The extraction and amplification of the DNA covered a total of 10 oligochaete taxa. For 7 of them (Ophidonais serpentina, Uncinais uncinata, Vejdovskyella intermedia, Psammoryctides barbatus, Limnodrilus hoffmeisteri, Tubifex tubifex, and Bothrioneurum vejdovskyanum), we found other sequences in GenBank to compare genetic similarities with available data. For the other taxa (Lumbriculidae, and Enchytraeidae, and Nais sp.) no best hits were found in GenBank. The extraction and amplification of the DNA covered a total of 21 chironomid taxa. For ten species (Cladotanytarsus mancus, Cladotanytarsus atridorsum, Polypedilum scalaenum, Polypedilum nubeculosum, Benthalia carbonaria, Phaenopsectra flavipes, Clinotanypus nervosus, Paracladopelma laminatum, Cryptochironomus rostratus and Parakiefferiella finnmarkica) sequences were available in GenBank to compare genetic similarities. For the other taxa (Cryptochironomus sp., Demicryptochironomus vulneratus, Chironomus sp., Stictochironomus sp., Orthocladius sp., Cricotopus sp., Eukiefferiella sp., Procladius sp., Diamesa sp., Potthastia sp., and Monodiamesa bathyphila) no best hits were found in GenBank. For chironomids, DNA taxonomy revealed the existence of several species complexes. Covering more populations and more genetic markers for those taxa within a rationale of integrative taxonomy could solve the taxonomic problems and provide a reliable description of diversity.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.4081/aiol.2022.11051
- https://www.pagepressjournals.org/index.php/aiol/article/download/11051/10670
- OA Status
- diamond
- Cited By
- 1
- References
- 33
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- 10
- OpenAlex ID
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All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4320021631Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.4081/aiol.2022.11051Digital Object Identifier
- Title
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Building a local reference library for metabarcoding survey of lake macrobenthos: oligochaetes and chironomids from Lake MaggioreWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-12-27Full publication date if available
- Authors
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Silvia Zaupa, Diego Fontaneto, Raffaella Sabatino, Angela BoggeroList of authors in order
- Landing page
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https://doi.org/10.4081/aiol.2022.11051Publisher landing page
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https://www.pagepressjournals.org/index.php/aiol/article/download/11051/10670Direct link to full text PDF
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YesWhether a free full text is available
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diamondOpen access status per OpenAlex
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https://www.pagepressjournals.org/index.php/aiol/article/download/11051/10670Direct OA link when available
- Concepts
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Biology, Chironomidae, Ecology, Chironomus, Macrobenthos, Taxon, DNA barcoding, Fauna, Lumbricidae, Zoology, Benthic zone, Larva, EarthwormTop concepts (fields/topics) attached by OpenAlex
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1Total citation count in OpenAlex
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2025: 1Per-year citation counts (last 5 years)
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33Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| primary_location.raw_source_name | Advances in Oceanography and Limnology |
| primary_location.landing_page_url | https://doi.org/10.4081/aiol.2022.11051 |
| publication_date | 2022-12-27 |
| publication_year | 2022 |
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