CellSeg3D: self-supervised 3D cell segmentation for microscopy Article Swipe
Cyril Achard
,
Timokleia Kousi
,
M. M. Frey
,
Maxime Vidal
,
Yves Paychère
,
Colin Hofmann
,
Asim Iqbal
,
Sebastien B Hausmann
,
Stéphane Pagès
,
Mackenzie Weygandt Mathis
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.7554/elife.99848.1
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.7554/elife.99848.1
Understanding the complex three-dimensional structure of cells is crucial across many disciplines in biology and especially in neuroscience. Here, we introduce a novel 3D self-supervised learning method designed to address the inherent complexity of quantifying cells in 3D volumes, often in cleared neural tissue. We offer a new 3D mesoSPIM dataset and show that CellSeg3D can match state-of-the-art supervised methods. Our contributions are made accessible through a Python package with full GUI integration in napari.
Related Topics
Concepts
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.7554/elife.99848.1
- OA Status
- gold
- References
- 23
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4402306845
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4402306845Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.7554/elife.99848.1Digital Object Identifier
- Title
-
CellSeg3D: self-supervised 3D cell segmentation for microscopyWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-09-06Full publication date if available
- Authors
-
Cyril Achard, Timokleia Kousi, M. M. Frey, Maxime Vidal, Yves Paychère, Colin Hofmann, Asim Iqbal, Sebastien B Hausmann, Stéphane Pagès, Mackenzie Weygandt MathisList of authors in order
- Landing page
-
https://doi.org/10.7554/elife.99848.1Publisher landing page
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://doi.org/10.7554/elife.99848.1Direct OA link when available
- Concepts
-
Segmentation, Microscopy, Artificial intelligence, Computer science, Computer vision, Pattern recognition (psychology), Medicine, PathologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
0Total citation count in OpenAlex
- References (count)
-
23Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W4402306845 |
|---|---|
| doi | https://doi.org/10.7554/elife.99848.1 |
| ids.doi | https://doi.org/10.7554/elife.99848.1 |
| ids.openalex | https://openalex.org/W4402306845 |
| fwci | 0.0 |
| type | preprint |
| title | CellSeg3D: self-supervised 3D cell segmentation for microscopy |
| biblio.issue | |
| biblio.volume | |
| biblio.last_page | |
| biblio.first_page | |
| topics[0].id | https://openalex.org/T12859 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9998999834060669 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1304 |
| topics[0].subfield.display_name | Biophysics |
| topics[0].display_name | Cell Image Analysis Techniques |
| topics[1].id | https://openalex.org/T13114 |
| topics[1].field.id | https://openalex.org/fields/22 |
| topics[1].field.display_name | Engineering |
| topics[1].score | 0.9970999956130981 |
| topics[1].domain.id | https://openalex.org/domains/3 |
| topics[1].domain.display_name | Physical Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/2214 |
| topics[1].subfield.display_name | Media Technology |
| topics[1].display_name | Image Processing Techniques and Applications |
| topics[2].id | https://openalex.org/T11190 |
| topics[2].field.id | https://openalex.org/fields/22 |
| topics[2].field.display_name | Engineering |
| topics[2].score | 0.9865000247955322 |
| topics[2].domain.id | https://openalex.org/domains/3 |
| topics[2].domain.display_name | Physical Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/2204 |
| topics[2].subfield.display_name | Biomedical Engineering |
| topics[2].display_name | 3D Printing in Biomedical Research |
| is_xpac | False |
| apc_list | |
| apc_paid | |
| concepts[0].id | https://openalex.org/C89600930 |
| concepts[0].level | 2 |
| concepts[0].score | 0.6459822654724121 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q1423946 |
| concepts[0].display_name | Segmentation |
| concepts[1].id | https://openalex.org/C147080431 |
| concepts[1].level | 2 |
| concepts[1].score | 0.5878931879997253 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q1074953 |
| concepts[1].display_name | Microscopy |
| concepts[2].id | https://openalex.org/C154945302 |
| concepts[2].level | 1 |
| concepts[2].score | 0.49105167388916016 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q11660 |
| concepts[2].display_name | Artificial intelligence |
| concepts[3].id | https://openalex.org/C41008148 |
| concepts[3].level | 0 |
| concepts[3].score | 0.4316672682762146 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[3].display_name | Computer science |
| concepts[4].id | https://openalex.org/C31972630 |
| concepts[4].level | 1 |
| concepts[4].score | 0.3739323019981384 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q844240 |
| concepts[4].display_name | Computer vision |
| concepts[5].id | https://openalex.org/C153180895 |
| concepts[5].level | 2 |
| concepts[5].score | 0.32171738147735596 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q7148389 |
| concepts[5].display_name | Pattern recognition (psychology) |
| concepts[6].id | https://openalex.org/C71924100 |
| concepts[6].level | 0 |
| concepts[6].score | 0.18928226828575134 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q11190 |
| concepts[6].display_name | Medicine |
| concepts[7].id | https://openalex.org/C142724271 |
| concepts[7].level | 1 |
| concepts[7].score | 0.11719831824302673 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q7208 |
| concepts[7].display_name | Pathology |
| keywords[0].id | https://openalex.org/keywords/segmentation |
| keywords[0].score | 0.6459822654724121 |
| keywords[0].display_name | Segmentation |
| keywords[1].id | https://openalex.org/keywords/microscopy |
| keywords[1].score | 0.5878931879997253 |
| keywords[1].display_name | Microscopy |
| keywords[2].id | https://openalex.org/keywords/artificial-intelligence |
| keywords[2].score | 0.49105167388916016 |
| keywords[2].display_name | Artificial intelligence |
| keywords[3].id | https://openalex.org/keywords/computer-science |
| keywords[3].score | 0.4316672682762146 |
| keywords[3].display_name | Computer science |
| keywords[4].id | https://openalex.org/keywords/computer-vision |
| keywords[4].score | 0.3739323019981384 |
| keywords[4].display_name | Computer vision |
| keywords[5].id | https://openalex.org/keywords/pattern-recognition |
| keywords[5].score | 0.32171738147735596 |
| keywords[5].display_name | Pattern recognition (psychology) |
| keywords[6].id | https://openalex.org/keywords/medicine |
| keywords[6].score | 0.18928226828575134 |
| keywords[6].display_name | Medicine |
| keywords[7].id | https://openalex.org/keywords/pathology |
| keywords[7].score | 0.11719831824302673 |
| keywords[7].display_name | Pathology |
| language | en |
| locations[0].id | doi:10.7554/elife.99848.1 |
| locations[0].is_oa | True |
| locations[0].source | |
| locations[0].license | cc-by |
| locations[0].pdf_url | |
| locations[0].version | acceptedVersion |
| locations[0].raw_type | posted-content |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | False |
| locations[0].raw_source_name | |
| locations[0].landing_page_url | https://doi.org/10.7554/elife.99848.1 |
| indexed_in | crossref |
| authorships[0].author.id | https://openalex.org/A5102667408 |
| authorships[0].author.orcid | |
| authorships[0].author.display_name | Cyril Achard |
| authorships[0].countries | CH |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[0].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[0].institutions[0].id | https://openalex.org/I5124864 |
| authorships[0].institutions[0].ror | https://ror.org/02s376052 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[0].institutions[0].country_code | CH |
| authorships[0].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Cyril Achard |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[1].author.id | https://openalex.org/A5098689817 |
| authorships[1].author.orcid | |
| authorships[1].author.display_name | Timokleia Kousi |
| authorships[1].countries | CH |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[1].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[1].institutions[0].id | https://openalex.org/I5124864 |
| authorships[1].institutions[0].ror | https://ror.org/02s376052 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[1].institutions[0].country_code | CH |
| authorships[1].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Timokleia Kousi |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[2].author.id | https://openalex.org/A5003027806 |
| authorships[2].author.orcid | https://orcid.org/0000-0003-0535-0416 |
| authorships[2].author.display_name | M. M. Frey |
| authorships[2].countries | CH |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[2].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[2].institutions[0].id | https://openalex.org/I5124864 |
| authorships[2].institutions[0].ror | https://ror.org/02s376052 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[2].institutions[0].country_code | CH |
| authorships[2].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Markus Frey |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[3].author.id | https://openalex.org/A5109097696 |
| authorships[3].author.orcid | |
| authorships[3].author.display_name | Maxime Vidal |
| authorships[3].countries | CH |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[3].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[3].institutions[0].id | https://openalex.org/I5124864 |
| authorships[3].institutions[0].ror | https://ror.org/02s376052 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[3].institutions[0].country_code | CH |
| authorships[3].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Maxime Vidal |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[4].author.id | https://openalex.org/A5098689818 |
| authorships[4].author.orcid | |
| authorships[4].author.display_name | Yves Paychère |
| authorships[4].countries | CH |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[4].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[4].institutions[0].id | https://openalex.org/I5124864 |
| authorships[4].institutions[0].ror | https://ror.org/02s376052 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[4].institutions[0].country_code | CH |
| authorships[4].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Yves Paychère |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[5].author.id | https://openalex.org/A5111317879 |
| authorships[5].author.orcid | |
| authorships[5].author.display_name | Colin Hofmann |
| authorships[5].countries | CH |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[5].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[5].institutions[0].id | https://openalex.org/I5124864 |
| authorships[5].institutions[0].ror | https://ror.org/02s376052 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[5].institutions[0].country_code | CH |
| authorships[5].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Colin Hofmann |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[6].author.id | https://openalex.org/A5083371732 |
| authorships[6].author.orcid | https://orcid.org/0000-0003-2174-4554 |
| authorships[6].author.display_name | Asim Iqbal |
| authorships[6].countries | CH |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[6].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[6].institutions[0].id | https://openalex.org/I5124864 |
| authorships[6].institutions[0].ror | https://ror.org/02s376052 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[6].institutions[0].country_code | CH |
| authorships[6].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[6].author_position | middle |
| authorships[6].raw_author_name | Asim Iqbal |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[7].author.id | https://openalex.org/A5061872157 |
| authorships[7].author.orcid | https://orcid.org/0000-0002-4728-6865 |
| authorships[7].author.display_name | Sebastien B Hausmann |
| authorships[7].countries | CH |
| authorships[7].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[7].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[7].institutions[0].id | https://openalex.org/I5124864 |
| authorships[7].institutions[0].ror | https://ror.org/02s376052 |
| authorships[7].institutions[0].type | education |
| authorships[7].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[7].institutions[0].country_code | CH |
| authorships[7].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[7].author_position | middle |
| authorships[7].raw_author_name | Sebastien B Hausmann |
| authorships[7].is_corresponding | False |
| authorships[7].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[8].author.id | https://openalex.org/A5066354153 |
| authorships[8].author.orcid | https://orcid.org/0000-0003-0618-777X |
| authorships[8].author.display_name | Stéphane Pagès |
| authorships[8].countries | CH |
| authorships[8].affiliations[0].institution_ids | https://openalex.org/I4210160687 |
| authorships[8].affiliations[0].raw_affiliation_string | Wyss Center for Bio and Neuroengineering. Geneva |
| authorships[8].institutions[0].id | https://openalex.org/I4210160687 |
| authorships[8].institutions[0].ror | https://ror.org/05tg4dc47 |
| authorships[8].institutions[0].type | nonprofit |
| authorships[8].institutions[0].lineage | https://openalex.org/I4210160687 |
| authorships[8].institutions[0].country_code | CH |
| authorships[8].institutions[0].display_name | Wyss Center for Bio and Neuroengineering |
| authorships[8].author_position | middle |
| authorships[8].raw_author_name | Stéphane Pagès |
| authorships[8].is_corresponding | False |
| authorships[8].raw_affiliation_strings | Wyss Center for Bio and Neuroengineering. Geneva |
| authorships[9].author.id | https://openalex.org/A5025196309 |
| authorships[9].author.orcid | https://orcid.org/0000-0001-7368-4456 |
| authorships[9].author.display_name | Mackenzie Weygandt Mathis |
| authorships[9].countries | CH |
| authorships[9].affiliations[0].institution_ids | https://openalex.org/I5124864 |
| authorships[9].affiliations[0].raw_affiliation_string | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| authorships[9].institutions[0].id | https://openalex.org/I5124864 |
| authorships[9].institutions[0].ror | https://ror.org/02s376052 |
| authorships[9].institutions[0].type | education |
| authorships[9].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I5124864 |
| authorships[9].institutions[0].country_code | CH |
| authorships[9].institutions[0].display_name | École Polytechnique Fédérale de Lausanne |
| authorships[9].author_position | last |
| authorships[9].raw_author_name | Mackenzie Weygandt Mathis |
| authorships[9].is_corresponding | False |
| authorships[9].raw_affiliation_strings | Brain Mind Institute & Neuro X, École Polytechnique Fédérale de Lausanne (EPFL). Geneva |
| has_content.pdf | False |
| has_content.grobid_xml | False |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://doi.org/10.7554/elife.99848.1 |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | CellSeg3D: self-supervised 3D cell segmentation for microscopy |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-25T14:43:58.451035 |
| primary_topic.id | https://openalex.org/T12859 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9998999834060669 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1304 |
| primary_topic.subfield.display_name | Biophysics |
| primary_topic.display_name | Cell Image Analysis Techniques |
| related_works | https://openalex.org/W2058170566, https://openalex.org/W2755342338, https://openalex.org/W2772917594, https://openalex.org/W2775347418, https://openalex.org/W2166024367, https://openalex.org/W3116076068, https://openalex.org/W2229312674, https://openalex.org/W2951359407, https://openalex.org/W2079911747, https://openalex.org/W1969923398 |
| cited_by_count | 0 |
| locations_count | 1 |
| best_oa_location.id | doi:10.7554/elife.99848.1 |
| best_oa_location.is_oa | True |
| best_oa_location.source | |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | |
| best_oa_location.version | acceptedVersion |
| best_oa_location.raw_type | posted-content |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | False |
| best_oa_location.raw_source_name | |
| best_oa_location.landing_page_url | https://doi.org/10.7554/elife.99848.1 |
| primary_location.id | doi:10.7554/elife.99848.1 |
| primary_location.is_oa | True |
| primary_location.source | |
| primary_location.license | cc-by |
| primary_location.pdf_url | |
| primary_location.version | acceptedVersion |
| primary_location.raw_type | posted-content |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | False |
| primary_location.raw_source_name | |
| primary_location.landing_page_url | https://doi.org/10.7554/elife.99848.1 |
| publication_date | 2024-09-06 |
| publication_year | 2024 |
| referenced_works | https://openalex.org/W2973461991, https://openalex.org/W6785231968, https://openalex.org/W3111521801, https://openalex.org/W2977175469, https://openalex.org/W4382491502, https://openalex.org/W4393200219, https://openalex.org/W2641905542, https://openalex.org/W4213144316, https://openalex.org/W3200028852, https://openalex.org/W2770180314, https://openalex.org/W3137561054, https://openalex.org/W2984014186, https://openalex.org/W4289363189, https://openalex.org/W6949899939, https://openalex.org/W4308361273, https://openalex.org/W3158103363, https://openalex.org/W2068391384, https://openalex.org/W4322615161, https://openalex.org/W2121947440, https://openalex.org/W4297426812, https://openalex.org/W6891805465, https://openalex.org/W4300139707, https://openalex.org/W4362679702 |
| referenced_works_count | 23 |
| abstract_inverted_index.a | 22, 47, 67 |
| abstract_inverted_index.3D | 24, 38, 49 |
| abstract_inverted_index.We | 45 |
| abstract_inverted_index.in | 13, 17, 37, 41, 74 |
| abstract_inverted_index.is | 8 |
| abstract_inverted_index.of | 6, 34 |
| abstract_inverted_index.to | 29 |
| abstract_inverted_index.we | 20 |
| abstract_inverted_index.GUI | 72 |
| abstract_inverted_index.Our | 61 |
| abstract_inverted_index.and | 15, 52 |
| abstract_inverted_index.are | 63 |
| abstract_inverted_index.can | 56 |
| abstract_inverted_index.new | 48 |
| abstract_inverted_index.the | 2, 31 |
| abstract_inverted_index.full | 71 |
| abstract_inverted_index.made | 64 |
| abstract_inverted_index.many | 11 |
| abstract_inverted_index.show | 53 |
| abstract_inverted_index.that | 54 |
| abstract_inverted_index.with | 70 |
| abstract_inverted_index.Here, | 19 |
| abstract_inverted_index.cells | 7, 36 |
| abstract_inverted_index.match | 57 |
| abstract_inverted_index.novel | 23 |
| abstract_inverted_index.offer | 46 |
| abstract_inverted_index.often | 40 |
| abstract_inverted_index.Python | 68 |
| abstract_inverted_index.across | 10 |
| abstract_inverted_index.method | 27 |
| abstract_inverted_index.neural | 43 |
| abstract_inverted_index.address | 30 |
| abstract_inverted_index.biology | 14 |
| abstract_inverted_index.cleared | 42 |
| abstract_inverted_index.complex | 3 |
| abstract_inverted_index.crucial | 9 |
| abstract_inverted_index.dataset | 51 |
| abstract_inverted_index.napari. | 75 |
| abstract_inverted_index.package | 69 |
| abstract_inverted_index.through | 66 |
| abstract_inverted_index.tissue. | 44 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.designed | 28 |
| abstract_inverted_index.inherent | 32 |
| abstract_inverted_index.learning | 26 |
| abstract_inverted_index.mesoSPIM | 50 |
| abstract_inverted_index.methods. | 60 |
| abstract_inverted_index.volumes, | 39 |
| abstract_inverted_index.CellSeg3D | 55 |
| abstract_inverted_index.introduce | 21 |
| abstract_inverted_index.structure | 5 |
| abstract_inverted_index.accessible | 65 |
| abstract_inverted_index.complexity | 33 |
| abstract_inverted_index.especially | 16 |
| abstract_inverted_index.supervised | 59 |
| abstract_inverted_index.disciplines | 12 |
| abstract_inverted_index.integration | 73 |
| abstract_inverted_index.quantifying | 35 |
| abstract_inverted_index.Understanding | 1 |
| abstract_inverted_index.contributions | 62 |
| abstract_inverted_index.neuroscience. | 18 |
| abstract_inverted_index.self-supervised | 25 |
| abstract_inverted_index.state-of-the-art | 58 |
| abstract_inverted_index.three-dimensional | 4 |
| cited_by_percentile_year | |
| countries_distinct_count | 1 |
| institutions_distinct_count | 10 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/4 |
| sustainable_development_goals[0].score | 0.46000000834465027 |
| sustainable_development_goals[0].display_name | Quality Education |
| citation_normalized_percentile.value | 0.10776553 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |