Characterization of a late blight resistance gene homologous toR2in potato variety Payette Russet Article Swipe
Hari S. Karki
,
Dennis Halterman
,
Jeffrey B. Endelman
·
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.1101/2020.09.27.315812
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.1101/2020.09.27.315812
Breeding for late blight resistance has traditionally relied on phenotypic selection, but as the number of characterized resistance (R) genes has grown, so have the possibilities for genotypic selection. One challenge for breeding russet varieties is the lack of information about the genetic basis of resistance in this germplasm group. Based on observations of strong resistance by ‘Payette Russet’ to genotype US-23 of the late blight pathogen Phytophthora infestans in inoculated experiments, we deduced the variety must contain at least one major R gene. To identify the gene(s), 79 F1 progeny were screened using a detached leaf assay and classified as resistant vs. susceptible. Linkage mapping using markers from the potato SNP array revealed a single resistant haplotype on the short arm of chromosome group 4, which coincides with the R2/Rpi-abpt/Rpi-blb3 locus. PCR amplification and sequencing of the gene in Payette revealed it is homologous to R2 , and transient expression experiments in Nicotiana benthamiana confirmed its recognition of the Avr2 effector. Sequencing of a small diversity panel revealed a SNP unique to resistant haplotypes at the R2 locus, which was converted to a KASP marker that showed perfect prediction accuracy in the F1 population and diversity panel. Although many genotypes of P. infestans are virulent against R2 , even when defeated this gene may be valuable as one component of a multi-genic approach to quantitative resistance.
Related Topics
Concepts
Phytophthora infestans
Biology
Genetics
Germplasm
Locus (genetics)
Blight
Gene
Genotype
Population
R gene
Marker-assisted selection
Plant disease resistance
Botany
Sociology
Demography
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2020.09.27.315812
- https://www.biorxiv.org/content/biorxiv/early/2020/09/27/2020.09.27.315812.full.pdf
- OA Status
- green
- References
- 38
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3089008657
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W3089008657Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2020.09.27.315812Digital Object Identifier
- Title
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Characterization of a late blight resistance gene homologous toR2in potato variety Payette RussetWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2020Year of publication
- Publication date
-
2020-09-27Full publication date if available
- Authors
-
Hari S. Karki, Dennis Halterman, Jeffrey B. EndelmanList of authors in order
- Landing page
-
https://doi.org/10.1101/2020.09.27.315812Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2020/09/27/2020.09.27.315812.full.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2020/09/27/2020.09.27.315812.full.pdfDirect OA link when available
- Concepts
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Phytophthora infestans, Biology, Genetics, Germplasm, Locus (genetics), Blight, Gene, Genotype, Population, R gene, Marker-assisted selection, Plant disease resistance, Botany, Sociology, DemographyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
- References (count)
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38Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.arm | 122 |
| abstract_inverted_index.but | 12 |
| abstract_inverted_index.for | 2, 27, 32 |
| abstract_inverted_index.has | 6, 21 |
| abstract_inverted_index.its | 157 |
| abstract_inverted_index.may | 215 |
| abstract_inverted_index.one | 81, 219 |
| abstract_inverted_index.the | 14, 25, 37, 42, 64, 75, 87, 110, 120, 130, 138, 160, 177, 193 |
| abstract_inverted_index.vs. | 103 |
| abstract_inverted_index.was | 181 |
| abstract_inverted_index.Avr2 | 161 |
| abstract_inverted_index.KASP | 185 |
| abstract_inverted_index.even | 210 |
| abstract_inverted_index.from | 109 |
| abstract_inverted_index.gene | 139, 214 |
| abstract_inverted_index.have | 24 |
| abstract_inverted_index.lack | 38 |
| abstract_inverted_index.late | 3, 65 |
| abstract_inverted_index.leaf | 97 |
| abstract_inverted_index.many | 200 |
| abstract_inverted_index.must | 77 |
| abstract_inverted_index.that | 187 |
| abstract_inverted_index.this | 48, 213 |
| abstract_inverted_index.were | 92 |
| abstract_inverted_index.when | 211 |
| abstract_inverted_index.with | 129 |
| abstract_inverted_index.Based | 51 |
| abstract_inverted_index.US-23 | 62 |
| abstract_inverted_index.about | 41 |
| abstract_inverted_index.array | 113 |
| abstract_inverted_index.assay | 98 |
| abstract_inverted_index.basis | 44 |
| abstract_inverted_index.gene. | 84 |
| abstract_inverted_index.genes | 20 |
| abstract_inverted_index.group | 125 |
| abstract_inverted_index.least | 80 |
| abstract_inverted_index.major | 82 |
| abstract_inverted_index.panel | 168 |
| abstract_inverted_index.short | 121 |
| abstract_inverted_index.small | 166 |
| abstract_inverted_index.using | 94, 107 |
| abstract_inverted_index.which | 127, 180 |
| abstract_inverted_index.blight | 4, 66 |
| abstract_inverted_index.group. | 50 |
| abstract_inverted_index.grown, | 22 |
| abstract_inverted_index.locus, | 179 |
| abstract_inverted_index.locus. | 132 |
| abstract_inverted_index.marker | 186 |
| abstract_inverted_index.number | 15 |
| abstract_inverted_index.panel. | 198 |
| abstract_inverted_index.potato | 111 |
| abstract_inverted_index.relied | 8 |
| abstract_inverted_index.russet | 34 |
| abstract_inverted_index.showed | 188 |
| abstract_inverted_index.single | 116 |
| abstract_inverted_index.strong | 55 |
| abstract_inverted_index.unique | 172 |
| abstract_inverted_index.Linkage | 105 |
| abstract_inverted_index.Payette | 141 |
| abstract_inverted_index.against | 207 |
| abstract_inverted_index.contain | 78 |
| abstract_inverted_index.deduced | 74 |
| abstract_inverted_index.genetic | 43 |
| abstract_inverted_index.mapping | 106 |
| abstract_inverted_index.markers | 108 |
| abstract_inverted_index.perfect | 189 |
| abstract_inverted_index.progeny | 91 |
| abstract_inverted_index.variety | 76 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.Although | 199 |
| abstract_inverted_index.Breeding | 1 |
| abstract_inverted_index.accuracy | 191 |
| abstract_inverted_index.approach | 224 |
| abstract_inverted_index.breeding | 33 |
| abstract_inverted_index.defeated | 212 |
| abstract_inverted_index.detached | 96 |
| abstract_inverted_index.gene(s), | 88 |
| abstract_inverted_index.genotype | 61 |
| abstract_inverted_index.identify | 86 |
| abstract_inverted_index.pathogen | 67 |
| abstract_inverted_index.revealed | 114, 142, 169 |
| abstract_inverted_index.screened | 93 |
| abstract_inverted_index.valuable | 217 |
| abstract_inverted_index.virulent | 206 |
| abstract_inverted_index.Nicotiana | 154 |
| abstract_inverted_index.Russet’ | 59 |
| abstract_inverted_index.challenge | 31 |
| abstract_inverted_index.coincides | 128 |
| abstract_inverted_index.component | 220 |
| abstract_inverted_index.confirmed | 156 |
| abstract_inverted_index.converted | 182 |
| abstract_inverted_index.diversity | 167, 197 |
| abstract_inverted_index.effector. | 162 |
| abstract_inverted_index.genotypes | 201 |
| abstract_inverted_index.genotypic | 28 |
| abstract_inverted_index.germplasm | 49 |
| abstract_inverted_index.haplotype | 118 |
| abstract_inverted_index.infestans | 69, 204 |
| abstract_inverted_index.resistant | 102, 117, 174 |
| abstract_inverted_index.transient | 150 |
| abstract_inverted_index.varieties | 35 |
| abstract_inverted_index.Sequencing | 163 |
| abstract_inverted_index.chromosome | 124 |
| abstract_inverted_index.classified | 100 |
| abstract_inverted_index.expression | 151 |
| abstract_inverted_index.haplotypes | 175 |
| abstract_inverted_index.homologous | 145 |
| abstract_inverted_index.inoculated | 71 |
| abstract_inverted_index.phenotypic | 10 |
| abstract_inverted_index.population | 195 |
| abstract_inverted_index.prediction | 190 |
| abstract_inverted_index.resistance | 5, 18, 46, 56 |
| abstract_inverted_index.selection, | 11 |
| abstract_inverted_index.selection. | 29 |
| abstract_inverted_index.sequencing | 136 |
| abstract_inverted_index.‘Payette | 58 |
| abstract_inverted_index.benthamiana | 155 |
| abstract_inverted_index.experiments | 152 |
| abstract_inverted_index.information | 40 |
| abstract_inverted_index.multi-genic | 223 |
| abstract_inverted_index.recognition | 158 |
| abstract_inverted_index.resistance. | 227 |
| abstract_inverted_index.Phytophthora | 68 |
| abstract_inverted_index.experiments, | 72 |
| abstract_inverted_index.observations | 53 |
| abstract_inverted_index.quantitative | 226 |
| abstract_inverted_index.susceptible. | 104 |
| abstract_inverted_index.amplification | 134 |
| abstract_inverted_index.characterized | 17 |
| abstract_inverted_index.possibilities | 26 |
| abstract_inverted_index.traditionally | 7 |
| abstract_inverted_index.R2/Rpi-abpt/Rpi-blb3 | 131 |
| cited_by_percentile_year | |
| corresponding_author_ids | https://openalex.org/A5021455318 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 3 |
| corresponding_institution_ids | https://openalex.org/I135310074 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/15 |
| sustainable_development_goals[0].score | 0.6800000071525574 |
| sustainable_development_goals[0].display_name | Life in Land |
| citation_normalized_percentile.value | 0.07056464 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |