Chromosome-level genome assembly for clubrush (Scirpus × mariqueter) endemic to China Article Swipe
Yu Ning
,
Yang Li
,
Chun Yi Li
,
Jin Zhi Wang
,
T. Wang
,
Yan Zheng
,
Ye Zhan
,
Shen Xu
,
Shu Bin Dong
,
Yifei Wang
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1038/s41597-025-05204-4
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1038/s41597-025-05204-4
Scirpus × mariqueter (Tang & F.T.Wang) Tatanov, which is endemic to eastern estuaries in China, is a tidal zone-engineering species with great promise for managing greenhouse gases and enhancing ecosystem resilience against invasive species. Although S. mariqueter is widely recognized as a hybrid species derived from Bolboschoenus planiculmis (F. Schmidt) T.V. Egorova and Schoenoplectus triqueter (L.) Palla, its speciation remains highly controversial. The lack of a reference genome is the major cause of this ambiguity. We generated the first chromosome-level genome assembly for S. mariqueter combining PacBio long-reads, Illumina short-reads, and the Hi-C method. The genome assembly consisted of 227.75 Mb (contig N50: 3.89 Mb). We also constructed a haploid karyotype comprising 54 pseudochromosomes. The average size of these pseudochromosomes was small (4.05 Mb). Thirty-two pseudochromosomes were assembled to a telomere to telomere level. Repetitive elements represented approximately 54.12% of the genome. We predicted and annotated 25,239 protein-coding genes. The overall BUSCO score was 95.10%, with notably few duplicated genes (1.70%). This high-quality genome provides critical data for future studies.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1038/s41597-025-05204-4
- https://www.nature.com/articles/s41597-025-05204-4.pdf
- OA Status
- gold
- References
- 39
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4410606824
All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W4410606824Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1038/s41597-025-05204-4Digital Object Identifier
- Title
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Chromosome-level genome assembly for clubrush (Scirpus × mariqueter) endemic to ChinaWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
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2025-05-22Full publication date if available
- Authors
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Yu Ning, Yang Li, Chun Yi Li, Jin Zhi Wang, T. Wang, Yan Zheng, Ye Zhan, Shen Xu, Shu Bin Dong, Yifei WangList of authors in order
- Landing page
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https://doi.org/10.1038/s41597-025-05204-4Publisher landing page
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https://www.nature.com/articles/s41597-025-05204-4.pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://www.nature.com/articles/s41597-025-05204-4.pdfDirect OA link when available
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Scirpus, Biology, Chromosome, China, Genome, Genetics, Wetland, Computational biology, Gene, Geography, Ecology, ArchaeologyTop concepts (fields/topics) attached by OpenAlex
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0Total citation count in OpenAlex
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39Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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