Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic lice Article Swipe
Ye Xu
,
Ling Ma
,
Shanlin Liu
,
Yanxin Liang
,
Qiaoqiao Liu
,
Zhi Xin He
,
Li Tian
,
Yuange Duan
,
Wanzhi Cai
,
Hu Li
,
Fan Song
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/gigascience/giae004
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/gigascience/giae004
Background Lice (Psocodea: Phthiraptera) are one important group of parasites that infects birds and mammals. It is believed that the ancestor of parasitic lice originated on the ancient avian host, and ancient mammals acquired these parasites via host-switching from birds. Here we present the first chromosome-level genome of Menopon gallinae in Amblycera (earliest diverging lineage of parasitic lice). We explore the transition of louse host-switching from birds to mammals at the genomic level by identifying numerous idiosyncratic genomic variations. Results The assembled genome is 155 Mb in length, with a contig N50 of 27.42 Mb. Hi-C scaffolding assigned 97% of the bases to 5 chromosomes. The genome of M. gallinae retains a basal insect repertoire of 11,950 protein-coding genes. By comparing the genomes of lice to those of multiple representative insects in other orders, we discovered that gene families of digestion, detoxification, and immunity-related are generally conserved between bird lice and mammal lice, while mammal lice have undergone a significant reduction in genes related to chemosensory systems and temperature. This suggests that mammal lice have lost some of these genes through the adaption to environment and temperatures after host-switching. Furthermore, 7 genes related to hematophagy were positively selected in mammal lice, suggesting their involvement in the hematophagous behavior. Conclusions Our high-quality genome of M. gallinae provides a valuable resource for comparative genomic research in Phthiraptera and facilitates further studies on adaptive evolution of host-switching within parasitic lice.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/gigascience/giae004
- https://academic.oup.com/gigascience/article-pdf/13/1/giae004/56705471/giae004.pdf
- OA Status
- gold
- Cited By
- 7
- References
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- Related Works
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- OpenAlex ID
- https://openalex.org/W4391935625
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4391935625Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/gigascience/giae004Digital Object Identifier
- Title
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Chromosome-level genome of the poultry shaft louse Menopon gallinae provides insight into the host-switching and adaptive evolution of parasitic liceWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
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2024-01-01Full publication date if available
- Authors
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Ye Xu, Ling Ma, Shanlin Liu, Yanxin Liang, Qiaoqiao Liu, Zhi Xin He, Li Tian, Yuange Duan, Wanzhi Cai, Hu Li, Fan SongList of authors in order
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https://doi.org/10.1093/gigascience/giae004Publisher landing page
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https://academic.oup.com/gigascience/article-pdf/13/1/giae004/56705471/giae004.pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://academic.oup.com/gigascience/article-pdf/13/1/giae004/56705471/giae004.pdfDirect OA link when available
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Biology, Louse, Genome, Host (biology), Evolutionary biology, Gene, Zoology, Mammal, GeneticsTop concepts (fields/topics) attached by OpenAlex
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7Total citation count in OpenAlex
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2025: 2, 2024: 5Per-year citation counts (last 5 years)
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105Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.after | 188 |
| abstract_inverted_index.avian | 29 |
| abstract_inverted_index.basal | 113 |
| abstract_inverted_index.bases | 102 |
| abstract_inverted_index.birds | 13, 67 |
| abstract_inverted_index.first | 45 |
| abstract_inverted_index.genes | 163, 180, 192 |
| abstract_inverted_index.group | 8 |
| abstract_inverted_index.host, | 30 |
| abstract_inverted_index.level | 73 |
| abstract_inverted_index.lice, | 153, 201 |
| abstract_inverted_index.lice. | 237 |
| abstract_inverted_index.louse | 64 |
| abstract_inverted_index.other | 133 |
| abstract_inverted_index.their | 203 |
| abstract_inverted_index.these | 35, 179 |
| abstract_inverted_index.those | 127 |
| abstract_inverted_index.while | 154 |
| abstract_inverted_index.11,950 | 117 |
| abstract_inverted_index.birds. | 40 |
| abstract_inverted_index.contig | 91 |
| abstract_inverted_index.genes. | 119 |
| abstract_inverted_index.genome | 47, 83, 107, 212 |
| abstract_inverted_index.insect | 114 |
| abstract_inverted_index.lice). | 58 |
| abstract_inverted_index.mammal | 152, 155, 173, 200 |
| abstract_inverted_index.within | 235 |
| abstract_inverted_index.Menopon | 49 |
| abstract_inverted_index.Results | 80 |
| abstract_inverted_index.ancient | 28, 32 |
| abstract_inverted_index.between | 148 |
| abstract_inverted_index.explore | 60 |
| abstract_inverted_index.further | 228 |
| abstract_inverted_index.genomes | 123 |
| abstract_inverted_index.genomic | 72, 78, 222 |
| abstract_inverted_index.infects | 12 |
| abstract_inverted_index.insects | 131 |
| abstract_inverted_index.length, | 88 |
| abstract_inverted_index.lineage | 55 |
| abstract_inverted_index.mammals | 33, 69 |
| abstract_inverted_index.orders, | 134 |
| abstract_inverted_index.present | 43 |
| abstract_inverted_index.related | 164, 193 |
| abstract_inverted_index.retains | 111 |
| abstract_inverted_index.studies | 229 |
| abstract_inverted_index.systems | 167 |
| abstract_inverted_index.through | 181 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.acquired | 34 |
| abstract_inverted_index.adaption | 183 |
| abstract_inverted_index.adaptive | 231 |
| abstract_inverted_index.ancestor | 21 |
| abstract_inverted_index.assigned | 98 |
| abstract_inverted_index.believed | 18 |
| abstract_inverted_index.families | 139 |
| abstract_inverted_index.gallinae | 50, 110, 215 |
| abstract_inverted_index.mammals. | 15 |
| abstract_inverted_index.multiple | 129 |
| abstract_inverted_index.numerous | 76 |
| abstract_inverted_index.provides | 216 |
| abstract_inverted_index.research | 223 |
| abstract_inverted_index.resource | 219 |
| abstract_inverted_index.selected | 198 |
| abstract_inverted_index.suggests | 171 |
| abstract_inverted_index.valuable | 218 |
| abstract_inverted_index.(earliest | 53 |
| abstract_inverted_index.Amblycera | 52 |
| abstract_inverted_index.assembled | 82 |
| abstract_inverted_index.behavior. | 208 |
| abstract_inverted_index.comparing | 121 |
| abstract_inverted_index.conserved | 147 |
| abstract_inverted_index.diverging | 54 |
| abstract_inverted_index.evolution | 232 |
| abstract_inverted_index.generally | 146 |
| abstract_inverted_index.important | 7 |
| abstract_inverted_index.parasites | 10, 36 |
| abstract_inverted_index.parasitic | 23, 57, 236 |
| abstract_inverted_index.reduction | 161 |
| abstract_inverted_index.undergone | 158 |
| abstract_inverted_index.(Psocodea: | 3 |
| abstract_inverted_index.Background | 1 |
| abstract_inverted_index.digestion, | 141 |
| abstract_inverted_index.discovered | 136 |
| abstract_inverted_index.originated | 25 |
| abstract_inverted_index.positively | 197 |
| abstract_inverted_index.repertoire | 115 |
| abstract_inverted_index.suggesting | 202 |
| abstract_inverted_index.transition | 62 |
| abstract_inverted_index.Conclusions | 209 |
| abstract_inverted_index.comparative | 221 |
| abstract_inverted_index.environment | 185 |
| abstract_inverted_index.facilitates | 227 |
| abstract_inverted_index.hematophagy | 195 |
| abstract_inverted_index.identifying | 75 |
| abstract_inverted_index.involvement | 204 |
| abstract_inverted_index.scaffolding | 97 |
| abstract_inverted_index.significant | 160 |
| abstract_inverted_index.variations. | 79 |
| abstract_inverted_index.Furthermore, | 190 |
| abstract_inverted_index.Phthiraptera | 225 |
| abstract_inverted_index.chemosensory | 166 |
| abstract_inverted_index.chromosomes. | 105 |
| abstract_inverted_index.high-quality | 211 |
| abstract_inverted_index.temperature. | 169 |
| abstract_inverted_index.temperatures | 187 |
| abstract_inverted_index.Phthiraptera) | 4 |
| abstract_inverted_index.hematophagous | 207 |
| abstract_inverted_index.idiosyncratic | 77 |
| abstract_inverted_index.host-switching | 38, 65, 234 |
| abstract_inverted_index.protein-coding | 118 |
| abstract_inverted_index.representative | 130 |
| abstract_inverted_index.detoxification, | 142 |
| abstract_inverted_index.host-switching. | 189 |
| abstract_inverted_index.chromosome-level | 46 |
| abstract_inverted_index.immunity-related | 144 |
| cited_by_percentile_year.max | 98 |
| cited_by_percentile_year.min | 95 |
| corresponding_author_ids | https://openalex.org/A5029626484, https://openalex.org/A5089154481 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 11 |
| corresponding_institution_ids | https://openalex.org/I52158045 |
| citation_normalized_percentile.value | 0.93960983 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |