Cleavable crosslinkers redefined by novel MS3-trigger algorithm Article Swipe
Lars Kolbowski
,
Lutz Fischer
,
Juri Rappsilber
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1101/2023.01.26.525676
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1101/2023.01.26.525676
Crosslinking MS is currently transitioning from a routine tool in structural biology to enabling structural systems biology. MS-cleavable crosslinkers could substantially reduce the associated search space expansion by allowing an MS3-based approach for identifying crosslinked peptides. However, MS2-based approaches currently outperform approaches utilising MS3. We show here that MS3-trigger sensitivity and specificity were hampered algorithmically. Our four-step MS3-trigger algorithm greatly outperformed currently employed methods and comes close to reaching the theoretical limit.
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Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2023.01.26.525676
- https://www.biorxiv.org/content/biorxiv/early/2023/01/26/2023.01.26.525676.full.pdf
- OA Status
- green
- Cited By
- 5
- References
- 19
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4318159579
All OpenAlex metadata
Raw OpenAlex JSON
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- DOI
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https://doi.org/10.1101/2023.01.26.525676Digital Object Identifier
- Title
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Cleavable crosslinkers redefined by novel MS3-trigger algorithmWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2023Year of publication
- Publication date
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2023-01-26Full publication date if available
- Authors
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Lars Kolbowski, Lutz Fischer, Juri RappsilberList of authors in order
- Landing page
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https://doi.org/10.1101/2023.01.26.525676Publisher landing page
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https://www.biorxiv.org/content/biorxiv/early/2023/01/26/2023.01.26.525676.full.pdfDirect link to full text PDF
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YesWhether a free full text is available
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2023/01/26/2023.01.26.525676.full.pdfDirect OA link when available
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Computer science, Limit (mathematics), Algorithm, Sensitivity (control systems), Artificial intelligence, Mathematics, Engineering, Electronic engineering, Mathematical analysisTop concepts (fields/topics) attached by OpenAlex
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5Total citation count in OpenAlex
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2023: 5Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.approaches | 39, 42 |
| abstract_inverted_index.associated | 24 |
| abstract_inverted_index.outperform | 41 |
| abstract_inverted_index.structural | 11, 15 |
| abstract_inverted_index.MS3-trigger | 49, 58 |
| abstract_inverted_index.crosslinked | 35 |
| abstract_inverted_index.identifying | 34 |
| abstract_inverted_index.sensitivity | 50 |
| abstract_inverted_index.specificity | 52 |
| abstract_inverted_index.theoretical | 71 |
| abstract_inverted_index.Crosslinking | 1 |
| abstract_inverted_index.MS-cleavable | 18 |
| abstract_inverted_index.crosslinkers | 19 |
| abstract_inverted_index.outperformed | 61 |
| abstract_inverted_index.substantially | 21 |
| abstract_inverted_index.transitioning | 5 |
| abstract_inverted_index.algorithmically. | 55 |
| cited_by_percentile_year.max | 98 |
| cited_by_percentile_year.min | 97 |
| corresponding_author_ids | https://openalex.org/A5076844877 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 3 |
| corresponding_institution_ids | https://openalex.org/I4210134627, https://openalex.org/I4577782, https://openalex.org/I7877124, https://openalex.org/I98677209 |
| citation_normalized_percentile.value | 0.74546944 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |