ComMap: a software to perform large-scale structure-based mapping for cross-linking mass spectrometry Article Swipe
Weijie Zhang
,
Yichu Shan
,
Lili Zhao
,
Zhen Liang
,
Chao Liu
,
Lihua Zhang
,
Yukui Zhang
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1093/bioinformatics/btad077
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1093/bioinformatics/btad077
Motivation Chemical cross-linking combined with mass spectrometry (CXMS) is now a well-established method for profiling existing protein–protein interactions (PPIs) with partially known structures. It is expected to map the results of CXMS with existing structure databases to study the protein dynamic profile in the structure analysis. However, currently available structure-based analysis software suffers from the difficulty of achieving large-scale analysis. Besides, it is infeasible for structure analysis and data mining on a large scale, since of lacking global measurement of dynamic structure mapping results. Results ComMap (protein complex structure mapping) is a software designed to perform large-scale structure-based mapping by integrating CXMS data with existing structures. It allows complete the distance calculation of PPIs with existing structures in batch within minutes and provides scores for different PPI-structure pairs of testable hypothetical structural dynamism via a global view. Supplementary information Supplementary data are available at Bioinformatics online.
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- Landing Page
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- OA Status
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All OpenAlex metadata
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https://openalex.org/W4321371234Canonical identifier for this work in OpenAlex
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https://doi.org/10.1093/bioinformatics/btad077Digital Object Identifier
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ComMap: a software to perform large-scale structure-based mapping for cross-linking mass spectrometryWork title
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articleOpenAlex work type
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enPrimary language
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2023Year of publication
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2023-02-01Full publication date if available
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Weijie Zhang, Yichu Shan, Lili Zhao, Zhen Liang, Chao Liu, Lihua Zhang, Yukui ZhangList of authors in order
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https://doi.org/10.1093/bioinformatics/btad077Publisher landing page
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://doi.org/10.1093/bioinformatics/btad077Direct OA link when available
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Computer science, Software, Data mining, Profiling (computer programming), Dynamism, Data structure, Scale (ratio), Programming language, Quantum mechanics, PhysicsTop concepts (fields/topics) attached by OpenAlex
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4Total citation count in OpenAlex
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2024: 4Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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