Comparative genome analysis ofLactobacillus mudanjiangensis, an understudied member of theLactobacillus plantarumgroup Article Swipe
Sander Wuyts
,
Camille Nina Allonsius
,
Stijn Wittouck
,
Sofie Thys
,
Bart Lievens
,
Stefan Weckx
,
Luc De Vuyst
,
Sarah Lebeer
·
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1101/549451
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1101/549451
The genus Lactobacillus is known to be extremely diverse and consists of different phylogenetic groups that show a diversity roughly equal to the expected diversity of a typical bacterial genus. One of the most prominent phylogenetic groups within this genus is the Lactobacillus plantarum group which contains the understudied Lactobacillus mudanjiangensis species. Before this study, only one L. mudanjiangensis strain, DSM 28402 T , was described but without whole-genome analysis. In this study, three strains classified as L. mudanjiangensis , were isolated from three different carrot juice fermentations and their whole-genome sequence was determined, together with the genome sequence of the type strain. The genomes of all four strains were compared with publicly available L. plantarum group genome sequences. This analysis showed that L. mudanjiangensis harbored the second largest genome size and gene count of the whole L. plantarum group. In addition, all members of this species showed the presence of a gene coding for a putative cellulose-degrading enzyme. Finally, three of the four L. mudanjiangensis strains studied showed the presence of pili on scanning electron microscopy (SEM) images, which were linked to conjugative gene regions, coded on plasmids in at least two of the strains studied. Author summary Lactobacillus mudanjiangensis is an understudied species within the Lactobacillus plantarum group. Since its first description, no other studies have reported its isolation. Here, we present the first four genome sequences of this species, which include the genome sequence of the type strain and three new L. mudanjiangensis strains isolated from fermented carrot juice. The genomes of all four strains were compared with publicly available L. plantarum group genome sequences. We found that this species harbored the second largest genome size and gene count of the whole L. plantarum group. Furthermore, we present the first scanning electron microscopy (SEM) images of L. mudanjiangensis , which showed the formation of pili in three strains that we linked to genes related to conjugation. Finally, we found the presence of a unique putative cellulose-degrading enzyme, opening the door for different industrial applications of these Lactobacillus strains.
Related Topics
Concepts
Lactobacillus plantarum
Biology
Genome
Lactobacillus
Whole genome sequencing
Phylogenetic tree
Genetics
Gene
Strain (injury)
Genome size
Microbiology
Bacteria
Lactic acid
Anatomy
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/549451
- https://www.biorxiv.org/content/biorxiv/early/2019/02/13/549451.full.pdf
- OA Status
- green
- References
- 86
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2914389109
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2914389109Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/549451Digital Object Identifier
- Title
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Comparative genome analysis ofLactobacillus mudanjiangensis, an understudied member of theLactobacillus plantarumgroupWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2019Year of publication
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2019-02-13Full publication date if available
- Authors
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Sander Wuyts, Camille Nina Allonsius, Stijn Wittouck, Sofie Thys, Bart Lievens, Stefan Weckx, Luc De Vuyst, Sarah LebeerList of authors in order
- Landing page
-
https://doi.org/10.1101/549451Publisher landing page
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https://www.biorxiv.org/content/biorxiv/early/2019/02/13/549451.full.pdfDirect link to full text PDF
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YesWhether a free full text is available
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2019/02/13/549451.full.pdfDirect OA link when available
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Lactobacillus plantarum, Biology, Genome, Lactobacillus, Whole genome sequencing, Phylogenetic tree, Genetics, Gene, Strain (injury), Genome size, Microbiology, Bacteria, Lactic acid, AnatomyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
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86Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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