Comparative transcriptome profiling reveals the cold stress responsiveness in two contrasting Chinese jujube cultivars Article Swipe
Heying Zhou
,
Xiaoming Pang
,
Ying He
,
Y. S. Zhu
,
Meiyu Li
,
Shuang Song
,
Wenhao Bo
,
Yingyue Li
·
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.21203/rs.2.21483/v1
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.21203/rs.2.21483/v1
Background Low temperature is a major factor influences the growth and development of Chinese jujube ( Ziziphus jujuba Mill.) in cold winter and spring. Little is known about the molecular mechanisms for coping with different freezing stress conditions in jujube. To gain insight into the freezing-related molecular changes, we conducted comparative transcriptome analyses from the cold-sensitive cultivar ‘Dongzao’ and cold-tolerant cultivar ‘Jinsixiaozao’ using RNA-Seq. Results In our study, more than 20,000 genes were detected at chilling (4°C) and freezing (-10°C, -20°C, -30°C and -40°C) stress between two cultivars. The numbers of differentially expressed genes (DEGs) between the two cultivars was 1831, 2030, 1993, 1845 and 2137 under the five treatments, respectively. Functional enrichment analysis suggested that metabolic pathway, response to stimulus and catalytic activity were significantly enriched at stronger freezing stress. Among them, nine DEGs participated in the pathway of Ca 2+ signal, thirty-two DEGs were identified to take part in sucrose metabolism, and other DEGs were identified to participate in the regulation of ROS, plant hormones and antifreeze protein. In addition, important transcription factors ( WRKY , AP2 / ERF , NAC and bZIP ) participating in the freezing stress were activated under different degrees of freezing stress. Conclusions Our research provides a more comprehensive understanding of DEGs involved in freezing stress at the transcriptome levels in Z. jujuba , especially two cultivars with different cold tolerance. These results expanding our understanding on the complex molecular mechanism of jujube, which also provide new insights and candidate genes for genetic improvement of jujube tolerance to freezing stress.
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- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.21203/rs.2.21483/v1
- https://www.researchsquare.com/article/rs-12075/v1.pdf
- OA Status
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- References
- 47
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4252716545
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- DOI
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https://doi.org/10.21203/rs.2.21483/v1Digital Object Identifier
- Title
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Comparative transcriptome profiling reveals the cold stress responsiveness in two contrasting Chinese jujube cultivarsWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2020Year of publication
- Publication date
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2020-01-22Full publication date if available
- Authors
-
Heying Zhou, Xiaoming Pang, Ying He, Y. S. Zhu, Meiyu Li, Shuang Song, Wenhao Bo, Yingyue LiList of authors in order
- Landing page
-
https://doi.org/10.21203/rs.2.21483/v1Publisher landing page
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https://www.researchsquare.com/article/rs-12075/v1.pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://www.researchsquare.com/article/rs-12075/v1.pdfDirect OA link when available
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Transcriptome, Cultivar, Profiling (computer programming), Biology, Botany, Horticulture, Computer science, Genetics, Gene expression, Gene, Operating systemTop concepts (fields/topics) attached by OpenAlex
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0Total citation count in OpenAlex
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