Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico Article Swipe
Hugo G. Castelán‐Sánchez
,
Luis Delaye
,
Rhys Inward
,
Simon Dellicour
,
Bernardo Gutiérrez
,
Natalia Martínez de la Viña
,
Célia Boukadida
,
Oliver G. Pybus
,
Guillermo de Anda–Jáuregui
,
Plinio Guzmán
,
Marisol Flores-Garrido
,
Óscar Fontanelli
,
Maribel Hernández-Rosales
,
Amilcar Meneses‐Viveros
,
Gabriela Olmedo‐Álvarez
,
Alfredo Herrera‐Estrella
,
Alejandro Sánchez‐Flores
,
José Esteban Muñoz‐Medina
,
Andreu Comas‐García
,
Bruno Gómez‐Gil
,
Selene Zárate
,
Blanca Taboada
,
Susana López
,
Carlos F. Arias
,
Moritz U. G. Kraemer
,
Antonio Lazcano
,
Marina Escalera‐Zamudio
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1101/2022.07.05.498834
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1101/2022.07.05.498834
Over 200 different SARS-CoV-2 lineages have been observed in Mexico by November 2021. To investigate lineage replacement dynamics, we applied a phylodynamic approach and explored the evolutionary trajectories of five dominant lineages that circulated during the first year of local transmission. For most lineages, peaks in sampling frequencies coincided with different epidemiological waves of infection in Mexico. Lineages B.1.1.222 and B.1.1.519 exhibited similar dynamics, constituting clades that likely originated in Mexico and persisted for >12 months. Lineages B.1.1.7, P.1 and B.1.617.2 also displayed similar dynamics, characterized by multiple introduction events leading to a few successful extended local transmission chains that persisted for several months. For the largest B.1.617.2 clades, we further explored viral lineage movements across Mexico. Many clades were located within the south region of the country, suggesting that this area played a key role in the spread of SARS-CoV-2 in Mexico.
Related Topics
Concepts
Clade
Lineage (genetic)
Evolutionary dynamics
Evolutionary biology
Transmission (telecommunications)
Biology
Dynamics (music)
Virus
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Coronavirus disease 2019 (COVID-19)
Phylogenetic tree
Zoology
Virology
Genetics
Demography
Gene
Population
Medicine
Sociology
Pathology
Electrical engineering
Engineering
Physics
Infectious disease (medical specialty)
Acoustics
Disease
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2022.07.05.498834
- https://www.biorxiv.org/content/biorxiv/early/2022/08/10/2022.07.05.498834.full.pdf
- OA Status
- green
- Cited By
- 3
- References
- 60
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4284881927
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4284881927Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2022.07.05.498834Digital Object Identifier
- Title
-
Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in MexicoWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2022Year of publication
- Publication date
-
2022-07-05Full publication date if available
- Authors
-
Hugo G. Castelán‐Sánchez, Luis Delaye, Rhys Inward, Simon Dellicour, Bernardo Gutiérrez, Natalia Martínez de la Viña, Célia Boukadida, Oliver G. Pybus, Guillermo de Anda–Jáuregui, Plinio Guzmán, Marisol Flores-Garrido, Óscar Fontanelli, Maribel Hernández-Rosales, Amilcar Meneses‐Viveros, Gabriela Olmedo‐Álvarez, Alfredo Herrera‐Estrella, Alejandro Sánchez‐Flores, José Esteban Muñoz‐Medina, Andreu Comas‐García, Bruno Gómez‐Gil, Selene Zárate, Blanca Taboada, Susana López, Carlos F. Arias, Moritz U. G. Kraemer, Antonio Lazcano, Marina Escalera‐ZamudioList of authors in order
- Landing page
-
https://doi.org/10.1101/2022.07.05.498834Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2022/08/10/2022.07.05.498834.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2022/08/10/2022.07.05.498834.full.pdfDirect OA link when available
- Concepts
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Clade, Lineage (genetic), Evolutionary dynamics, Evolutionary biology, Transmission (telecommunications), Biology, Dynamics (music), Virus, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Coronavirus disease 2019 (COVID-19), Phylogenetic tree, Zoology, Virology, Genetics, Demography, Gene, Population, Medicine, Sociology, Pathology, Electrical engineering, Engineering, Physics, Infectious disease (medical specialty), Acoustics, DiseaseTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
3Total citation count in OpenAlex
- Citations by year (recent)
-
2023: 2, 2022: 1Per-year citation counts (last 5 years)
- References (count)
-
60Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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