Computationally restoring the potency of a clinical antibody against SARS-CoV-2 Omicron subvariants Article Swipe
YOU?
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· 2022
· Open Access
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· DOI: https://doi.org/10.1101/2022.10.21.513237
The COVID-19 pandemic underscored the promise of monoclonal antibody-based prophylactic and therapeutic drugs 1–3 , but also revealed how quickly viral escape can curtail effective options 4, 5 . With the emergence of the SARS-CoV-2 Omicron variant in late 2021, many clinically used antibody drug products lost potency, including Evusheld TM and its constituent, cilgavimab 4, 6 . Cilgavimab, like its progenitor COV2-2130, is a class 3 antibody that is compatible with other antibodies in combination 4 and is challenging to replace with existing approaches. Rapidly modifying such high-value antibodies with a known clinical profile to restore efficacy against emerging variants is a compelling mitigation strategy. We sought to redesign COV2-2130 to rescue in vivo efficacy against Omicron BA.1 and BA.1.1 strains while maintaining efficacy against the contemporaneously dominant Delta variant. Here we show that our computationally redesigned antibody, 2130-1-0114-112, achieves this objective, simultaneously increases neutralization potency against Delta and many variants of concern that subsequently emerged, and provides protection in vivo against the strains tested, WA1/2020, BA.1.1, and BA.5. Deep mutational scanning of tens of thousands pseudovirus variants reveals 2130-1-0114-112 improves broad potency without incurring additional escape liabilities. Our results suggest that computational approaches can optimize an antibody to target multiple escape variants, while simultaneously enriching potency. Because our approach is computationally driven, not requiring experimental iterations or pre-existing binding data, it could enable rapid response strategies to address escape variants or pre-emptively mitigate escape vulnerabilities.
Related Topics
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2022.10.21.513237
- https://www.biorxiv.org/content/biorxiv/early/2022/10/24/2022.10.21.513237.full.pdf
- OA Status
- green
- Cited By
- 5
- References
- 71
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4307280721
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4307280721Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2022.10.21.513237Digital Object Identifier
- Title
-
Computationally restoring the potency of a clinical antibody against SARS-CoV-2 Omicron subvariantsWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2022Year of publication
- Publication date
-
2022-10-24Full publication date if available
- Authors
-
Thomas Desautels, Kathryn T. Arrildt, Adam Zemła, Edmond Y. Lau, Fangqiang Zhu, Dante P. Ricci, Stephanie E. J. Cronin, Seth J. Zost, Elad Binshtein, Suzanne M. Scheaffer, Bernadeta Dadonaite, Brenden K. Petersen, Taylor B. Engdahl, Elaine Chen, Laura S. Handal, Lynn Hall, John W. Goforth, Denis Vashchenko, Sam Nguyen, Dina R. Weilhammer, Jacky Lo, Bonnee Rubinfeld, Edwin A. Saada, Tracy Weisenberger, Tek-Hyung Lee, Bradley Whitener, James Brett Case, Alexander Ladd, Mary S. Silva, Rebecca M. Haluska, Emilia A. Grzesiak, Christopher G. Earnhart, Svetlana A. Hopkins, Thomas W. Bates, Larissa B. Thackray, Brent W. Segelke, Antonietta Lillo, Shivshankar Sundaram, Jesse D. Bloom, Michael S. Diamond, James E. Crowe, Robert H. Carnahan, Daniel FaissolList of authors in order
- Landing page
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https://doi.org/10.1101/2022.10.21.513237Publisher landing page
- PDF URL
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https://www.biorxiv.org/content/biorxiv/early/2022/10/24/2022.10.21.513237.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2022/10/24/2022.10.21.513237.full.pdfDirect OA link when available
- Concepts
-
Potency, Antibody, In vivo, Neutralization, Monoclonal antibody, Coronavirus disease 2019 (COVID-19), Computational biology, Clinical efficacy, Pandemic, Virology, Computer science, Biology, In vitro, Immunology, Medicine, Genetics, Disease, Internal medicine, Infectious disease (medical specialty)Top concepts (fields/topics) attached by OpenAlex
- Cited by
-
5Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 2, 2024: 1, 2023: 2Per-year citation counts (last 5 years)
- References (count)
-
71Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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