Data from Mitotic Checkpoints and Chromosome Instability Are Strong Predictors of Clinical Outcome in Gastrointestinal Stromal Tumors Article Swipe
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1158/1078-0432.c.6519807
Purpose: The importance of KIT and PDGFRA mutations in the oncogenesis of gastrointestinal stromal tumors (GIST) is well established, but the genetic basis of GIST metastasis is poorly understood. We recently published a 67 gene expression prognostic signature related to genome complexity (CINSARC for Complexity INdex in SARComas) and asked whether it could predict outcome in GISTs.Experimental Design: We carried out genome and expression profiling on 67 primary untreated GISTs.Results: We show and validate here that it can predict metastasis in a new data set of 67 primary untreated GISTs. The gene whose expression was most strongly associated with metastasis was AURKA, but the AURKA locus was not amplified. Instead, we identified deletion of the p16 (CDKN2A) and retinoblastoma (RB1) genes as likely causal events leading to increased AURKA and CINSARC gene expression, to chromosome rearrangement, and ultimately to metastasis. On the basis of these findings, we established a Genomic Index that integrates the number and type of DNA copy number alterations. This index is a strong prognostic factor in GISTs. We show that CINSARC class, AURKA expression, and Genomic Index all outperform the Armed Forces Institute of Pathology (AFIP) grading system in determining the prognosis of patients with GISTs. Interestingly, these signatures can identify poor prognosis patients in the group classified as intermediate-risk by the AFIP classification.Conclusions: We propose that a high Genomic Index determined by comparative genomic hybridization from formalin-fixed, paraffin-embedded samples could be used to identify AFIP intermediate-risk patients who would benefit from imatinib therapy. Clin Cancer Res; 18(3); 826–38. ©2011 AACR.
Related Topics
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1158/1078-0432.c.6519807
- OA Status
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- Related Works
- 10
- OpenAlex ID
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Raw OpenAlex JSON
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https://openalex.org/W4361944220Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1158/1078-0432.c.6519807Digital Object Identifier
- Title
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Data from Mitotic Checkpoints and Chromosome Instability Are Strong Predictors of Clinical Outcome in Gastrointestinal Stromal TumorsWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2023Year of publication
- Publication date
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2023-03-31Full publication date if available
- Authors
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Pauline Lagarde, Gaëlle Pérot, Audrey Kauffmann, Céline Brulard, Valérie Dapremont, Isabelle Hostein, Agnès Neuville, Agnieszka Woźniak, Raf Sciot, Patrick Schöffski, Alain Aurias, Jean‐Michel Coindre, Maria Dêbiec‐Rychter, Frédéric ChibonList of authors in order
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https://doi.org/10.1158/1078-0432.c.6519807Publisher landing page
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://doi.org/10.1158/1078-0432.c.6519807Direct OA link when available
- Concepts
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CDKN2A, Metastasis, Cancer research, Biology, PDGFRA, Mitotic index, Chromosome instability, Genome instability, GiST, Stromal cell, Gene, Genetics, Chromosome, Cancer, Mitosis, DNA, DNA damageTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.GISTs. | 89, 170, 199 |
| abstract_inverted_index.causal | 123 |
| abstract_inverted_index.class, | 175 |
| abstract_inverted_index.events | 124 |
| abstract_inverted_index.factor | 168 |
| abstract_inverted_index.genome | 40, 61 |
| abstract_inverted_index.likely | 122 |
| abstract_inverted_index.number | 154, 160 |
| abstract_inverted_index.poorly | 27 |
| abstract_inverted_index.strong | 166 |
| abstract_inverted_index.system | 191 |
| abstract_inverted_index.tumors | 14 |
| abstract_inverted_index.©2011 | 253 |
| abstract_inverted_index.CINSARC | 130, 174 |
| abstract_inverted_index.Genomic | 149, 179, 223 |
| abstract_inverted_index.benefit | 244 |
| abstract_inverted_index.carried | 59 |
| abstract_inverted_index.genetic | 21 |
| abstract_inverted_index.genomic | 228 |
| abstract_inverted_index.grading | 190 |
| abstract_inverted_index.leading | 125 |
| abstract_inverted_index.outcome | 54 |
| abstract_inverted_index.predict | 53, 78 |
| abstract_inverted_index.primary | 67, 87 |
| abstract_inverted_index.propose | 219 |
| abstract_inverted_index.related | 38 |
| abstract_inverted_index.samples | 233 |
| abstract_inverted_index.stromal | 13 |
| abstract_inverted_index.whether | 50 |
| abstract_inverted_index.(CINSARC | 42 |
| abstract_inverted_index.Instead, | 109 |
| abstract_inverted_index.deletion | 112 |
| abstract_inverted_index.identify | 204, 238 |
| abstract_inverted_index.imatinib | 246 |
| abstract_inverted_index.patients | 197, 207, 241 |
| abstract_inverted_index.recently | 30 |
| abstract_inverted_index.strongly | 96 |
| abstract_inverted_index.therapy. | 247 |
| abstract_inverted_index.validate | 73 |
| abstract_inverted_index.826–38. | 252 |
| abstract_inverted_index.Institute | 186 |
| abstract_inverted_index.Pathology | 188 |
| abstract_inverted_index.SARComas) | 47 |
| abstract_inverted_index.findings, | 145 |
| abstract_inverted_index.increased | 127 |
| abstract_inverted_index.mutations | 7 |
| abstract_inverted_index.profiling | 64 |
| abstract_inverted_index.prognosis | 195, 206 |
| abstract_inverted_index.published | 31 |
| abstract_inverted_index.signature | 37 |
| abstract_inverted_index.untreated | 68, 88 |
| abstract_inverted_index.Complexity | 44 |
| abstract_inverted_index.amplified. | 108 |
| abstract_inverted_index.associated | 97 |
| abstract_inverted_index.chromosome | 134 |
| abstract_inverted_index.classified | 211 |
| abstract_inverted_index.complexity | 41 |
| abstract_inverted_index.determined | 225 |
| abstract_inverted_index.expression | 35, 63, 93 |
| abstract_inverted_index.identified | 111 |
| abstract_inverted_index.importance | 2 |
| abstract_inverted_index.integrates | 152 |
| abstract_inverted_index.metastasis | 25, 79, 99 |
| abstract_inverted_index.outperform | 182 |
| abstract_inverted_index.prognostic | 36, 167 |
| abstract_inverted_index.signatures | 202 |
| abstract_inverted_index.ultimately | 137 |
| abstract_inverted_index.comparative | 227 |
| abstract_inverted_index.determining | 193 |
| abstract_inverted_index.established | 147 |
| abstract_inverted_index.expression, | 132, 177 |
| abstract_inverted_index.metastasis. | 139 |
| abstract_inverted_index.oncogenesis | 10 |
| abstract_inverted_index.understood. | 28 |
| abstract_inverted_index.alterations. | 161 |
| abstract_inverted_index.established, | 18 |
| abstract_inverted_index.<i>Clin | 248 |
| abstract_inverted_index.hybridization | 229 |
| abstract_inverted_index.Interestingly, | 200 |
| abstract_inverted_index.rearrangement, | 135 |
| abstract_inverted_index.retinoblastoma | 118 |
| abstract_inverted_index.formalin-fixed, | 231 |
| abstract_inverted_index.gastrointestinal | 12 |
| abstract_inverted_index.Design:</b> | 57 |
| abstract_inverted_index.intermediate-risk | 213, 240 |
| abstract_inverted_index.paraffin-embedded | 232 |
| abstract_inverted_index.<i>KIT</i> | 4 |
| abstract_inverted_index.<i>p16</i> | 115 |
| abstract_inverted_index.<i>AURKA</i> | 104, 128, 176 |
| abstract_inverted_index.(<i>RB1</i>) | 119 |
| abstract_inverted_index.<i>AURKA</i>, | 101 |
| abstract_inverted_index.<i>PDGFRA</i> | 6 |
| abstract_inverted_index.(<i>CDKN2A</i>) | 116 |
| abstract_inverted_index.AACR</i>.</p></div> | 254 |
| abstract_inverted_index.GISTs.</p><p><b>Experimental | 56 |
| abstract_inverted_index.GISTs.</p><p><b>Results:</b> | 69 |
| abstract_inverted_index.<div>Abstract<p><b>Purpose:</b> | 0 |
| abstract_inverted_index.classification.</p><p><b>Conclusions:</b> | 217 |
| cited_by_percentile_year | |
| countries_distinct_count | 0 |
| institutions_distinct_count | 14 |
| citation_normalized_percentile.value | 0.08545105 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |