De Novo Assembly and Transcriptome Analysis of Wheat with Male Sterility Induced by the Chemical Hybridizing Agent SQ-1 Article Swipe
Qidi Zhu
,
Yulong Song
,
Gaisheng Zhang
,
Lan Ju
,
Jiao Zhang
,
Yongang Yu
,
Na Niu
,
Junwei Wang
,
Shoucai Ma
·
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1371/journal.pone.0123556
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1371/journal.pone.0123556
Wheat (Triticum aestivum L.), one of the world's most important food crops, is a strictly autogamous (self-pollinating) species with exclusively perfect flowers. Male sterility induced by chemical hybridizing agents has increasingly attracted attention as a tool for hybrid seed production in wheat; however, the molecular mechanisms of male sterility induced by the agent SQ-1 remain poorly understood due to limited whole transcriptome data. Therefore, a comparative analysis of wheat anther transcriptomes for male fertile wheat and SQ-1-induced male sterile wheat was carried out using next-generation sequencing technology. In all, 42,634,123 sequence reads were generated and were assembled into 82,356 high-quality unigenes with an average length of 724 bp. Of these, 1,088 unigenes were significantly differentially expressed in the fertile and sterile wheat anthers, including 643 up-regulated unigenes and 445 down-regulated unigenes. The differentially expressed unigenes with functional annotations were mapped onto 60 pathways using the Kyoto Encyclopedia of Genes and Genomes database. They were mainly involved in coding for the components of ribosomes, photosynthesis, respiration, purine and pyrimidine metabolism, amino acid metabolism, glutathione metabolism, RNA transport and signal transduction, reactive oxygen species metabolism, mRNA surveillance pathways, protein processing in the endoplasmic reticulum, protein export, and ubiquitin-mediated proteolysis. This study is the first to provide a systematic overview comparing wheat anther transcriptomes of male fertile wheat with those of SQ-1-induced male sterile wheat and is a valuable source of data for future research in SQ-1-induced wheat male sterility.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1371/journal.pone.0123556
- https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0123556&type=printable
- OA Status
- gold
- Cited By
- 24
- References
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- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2003490844
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2003490844Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1371/journal.pone.0123556Digital Object Identifier
- Title
-
De Novo Assembly and Transcriptome Analysis of Wheat with Male Sterility Induced by the Chemical Hybridizing Agent SQ-1Work title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2015Year of publication
- Publication date
-
2015-04-21Full publication date if available
- Authors
-
Qidi Zhu, Yulong Song, Gaisheng Zhang, Lan Ju, Jiao Zhang, Yongang Yu, Na Niu, Junwei Wang, Shoucai MaList of authors in order
- Landing page
-
https://doi.org/10.1371/journal.pone.0123556Publisher landing page
- PDF URL
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https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0123556&type=printableDirect link to full text PDF
- Open access
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
- OA URL
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https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0123556&type=printableDirect OA link when available
- Concepts
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Transcriptome, Biology, Sterility, Common wheat, Gene, Genetics, KEGG, Botany, Gene expression, ChromosomeTop concepts (fields/topics) attached by OpenAlex
- Cited by
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24Total citation count in OpenAlex
- Citations by year (recent)
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2025: 1, 2022: 1, 2021: 5, 2020: 1, 2019: 4Per-year citation counts (last 5 years)
- References (count)
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64Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.proteolysis. | 196 |
| abstract_inverted_index.respiration, | 164 |
| abstract_inverted_index.surveillance | 184 |
| abstract_inverted_index.up-regulated | 125 |
| abstract_inverted_index.significantly | 113 |
| abstract_inverted_index.transcriptome | 61 |
| abstract_inverted_index.transduction, | 178 |
| abstract_inverted_index.differentially | 114, 132 |
| abstract_inverted_index.down-regulated | 129 |
| abstract_inverted_index.transcriptomes | 70, 210 |
| abstract_inverted_index.next-generation | 84 |
| abstract_inverted_index.photosynthesis, | 163 |
| abstract_inverted_index.(self-pollinating) | 16 |
| abstract_inverted_index.ubiquitin-mediated | 195 |
| cited_by_percentile_year.max | 98 |
| cited_by_percentile_year.min | 89 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 9 |
| citation_normalized_percentile.value | 0.85253301 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |