Deciphering the fibre-orientation independent component of R2* (R2,iso*) in the human brain with a single multi-echo gradient-recalled-echo measurement under varying microstructural conditions Article Swipe
Francisco J. Fritz
,
Laurin Mordhorst
,
Mohammad Ashtarayeh
,
João Periquito
,
Andreas Pohlmann
,
Markus Morawski
,
Carsten Jaeger
,
Thoralf Niendorf
,
Kerrin Pine
,
Martina F. Callaghan
,
Nikolaus Weiskopf
,
Siawoosh Mohammadi
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1101/2022.03.28.486076
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1101/2022.03.28.486076
The effective transverse relaxation rate (R 2 *) is sensitive to the microstructure of the human brain, e.g. the g-ratio characterising the relative myelination of axons. However, R 2 * depends on the orientation of the fibres relative to the main magnetic field degrading its reproducibility and that of any microstructural derivative measure. To decipher its orientation-independent part (R 2,iso *), a second-order polynomial in time (M2) can be applied to single multi-echo gradient-recalled-echo (meGRE) measurements at arbitrary orientation. The linear-time dependent parameter, β 1 , of M2 can be biophysically related to R 2,iso * when neglecting the signal from the myelin water (MW) in the hollow cylinder fibre model (HCFM). Here, we examined the effectiveness of M2 using experimental and simulated data with variable g-ratio and fibre dispersion. We showed that the fitted β 1 effectively estimates R 2,iso *when using meGRE with long maximum echo time (TE max ≈ 54 ms) but its microscopic dependence on the g-ratio was not accurately captured. This error was reduced to less than 12% when accounting for the MW contribution in a newly introduced biophysical expression for β 1 . We further used this new expression to estimate the MW fraction (0.14) and g-ratio (0.79) in a human optic chiasm. However, the proposed method failed to estimate R 2,iso * for a typical in-vivo meGRE protocol (TE max ≈ 18 ms). At this TE max and around the magic angle, the HCFM-based simulations failed to explain the R 2 *-orientation-dependence. In conclusion, estimation of R 2,iso * with M2 in vivo requires meGRE protocols with very long TE max ≈ 54 ms.
Related Topics
Concepts
Orientation (vector space)
Nuclear magnetic resonance
Gradient echo
Echo (communications protocol)
Physics
Materials science
Analytical Chemistry (journal)
Mathematics
Optics
Computational physics
Molecular physics
Chemistry
Magnetic resonance imaging
Geometry
Computer science
Computer network
Chromatography
Medicine
Radiology
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2022.03.28.486076
- https://www.biorxiv.org/content/biorxiv/early/2022/03/29/2022.03.28.486076.full.pdf
- OA Status
- green
- References
- 58
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4221069534
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4221069534Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1101/2022.03.28.486076Digital Object Identifier
- Title
-
Deciphering the fibre-orientation independent component of R2* (R2,iso*) in the human brain with a single multi-echo gradient-recalled-echo measurement under varying microstructural conditionsWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2022Year of publication
- Publication date
-
2022-03-29Full publication date if available
- Authors
-
Francisco J. Fritz, Laurin Mordhorst, Mohammad Ashtarayeh, João Periquito, Andreas Pohlmann, Markus Morawski, Carsten Jaeger, Thoralf Niendorf, Kerrin Pine, Martina F. Callaghan, Nikolaus Weiskopf, Siawoosh MohammadiList of authors in order
- Landing page
-
https://doi.org/10.1101/2022.03.28.486076Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2022/03/29/2022.03.28.486076.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2022/03/29/2022.03.28.486076.full.pdfDirect OA link when available
- Concepts
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Orientation (vector space), Nuclear magnetic resonance, Gradient echo, Echo (communications protocol), Physics, Materials science, Analytical Chemistry (journal), Mathematics, Optics, Computational physics, Molecular physics, Chemistry, Magnetic resonance imaging, Geometry, Computer science, Computer network, Chromatography, Medicine, RadiologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
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58Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.degrading | 44 |
| abstract_inverted_index.dependent | 82 |
| abstract_inverted_index.effective | 2 |
| abstract_inverted_index.estimates | 139 |
| abstract_inverted_index.protocols | 263 |
| abstract_inverted_index.sensitive | 10 |
| abstract_inverted_index.simulated | 123 |
| abstract_inverted_index.HCFM-based | 241 |
| abstract_inverted_index.accounting | 175 |
| abstract_inverted_index.accurately | 164 |
| abstract_inverted_index.dependence | 158 |
| abstract_inverted_index.derivative | 52 |
| abstract_inverted_index.estimation | 252 |
| abstract_inverted_index.expression | 185, 195 |
| abstract_inverted_index.introduced | 183 |
| abstract_inverted_index.multi-echo | 73 |
| abstract_inverted_index.neglecting | 98 |
| abstract_inverted_index.parameter, | 83 |
| abstract_inverted_index.polynomial | 64 |
| abstract_inverted_index.relaxation | 4 |
| abstract_inverted_index.transverse | 3 |
| abstract_inverted_index.biophysical | 184 |
| abstract_inverted_index.conclusion, | 251 |
| abstract_inverted_index.dispersion. | 130 |
| abstract_inverted_index.effectively | 138 |
| abstract_inverted_index.linear-time | 81 |
| abstract_inverted_index.microscopic | 157 |
| abstract_inverted_index.myelination | 24 |
| abstract_inverted_index.orientation | 34 |
| abstract_inverted_index.simulations | 242 |
| abstract_inverted_index.contribution | 179 |
| abstract_inverted_index.experimental | 121 |
| abstract_inverted_index.measurements | 76 |
| abstract_inverted_index.orientation. | 79 |
| abstract_inverted_index.second-order | 63 |
| abstract_inverted_index.biophysically | 91 |
| abstract_inverted_index.effectiveness | 117 |
| abstract_inverted_index.characterising | 21 |
| abstract_inverted_index.microstructure | 13 |
| abstract_inverted_index.microstructural | 51 |
| abstract_inverted_index.reproducibility | 46 |
| abstract_inverted_index.gradient-recalled-echo | 74 |
| abstract_inverted_index.orientation-independent | 57 |
| abstract_inverted_index.*-orientation-dependence. | 249 |
| cited_by_percentile_year | |
| corresponding_author_ids | https://openalex.org/A5038774419 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 12 |
| corresponding_institution_ids | https://openalex.org/I159176309, https://openalex.org/I4210108711 |
| citation_normalized_percentile.value | 0.04390294 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |