Desiccation Tolerance Evolved through Gene Duplication and Network Rewiring in Lindernia Article Swipe
Robert VanBuren
,
Ching Man Wai
,
Jeremy Pardo
,
Valentino Giarola
,
Stefano Ambrosini
,
Xiaomin Song
,
Dorothea Bartels
·
YOU?
·
· 2018
· Open Access
·
· DOI: https://doi.org/10.1105/tpc.18.00517
YOU?
·
· 2018
· Open Access
·
· DOI: https://doi.org/10.1105/tpc.18.00517
Although several resurrection plant genomes have been sequenced, the lack of suitable dehydration-sensitive outgroups has limited genomic insights into the origin of desiccation tolerance. Here, we utilized a comparative system of closely related desiccation-tolerant (Lindernia brevidens) and -sensitive (Lindernia subracemosa) species to identify gene- and pathway-level changes associated with the evolution of desiccation tolerance. The two high-quality Lindernia genomes we assembled are largely collinear, and over 90% of genes are conserved. L. brevidens and L. subracemosa have evidence of an ancient, shared whole-genome duplication event, and retained genes have neofunctionalized, with desiccation-specific expression in L. brevidens Tandem gene duplicates also are enriched in desiccation-associated functions, including a dramatic expansion of early light-induced proteins from 4 to 26 copies in L. brevidens A comparative differential gene coexpression analysis between L. brevidens and L. subracemosa supports extensive network rewiring across early dehydration, desiccation, and rehydration time courses. Many LATE EMBRYOGENESIS ABUNDANT genes show significantly higher expression in L. brevidens compared with their orthologs in L. subracemosa Coexpression modules uniquely upregulated during desiccation in L. brevidens are enriched with seed-specific and abscisic acid-associated cis-regulatory elements. These modules contain a wide array of seed-associated genes that have no expression in the desiccation-sensitive L. subracemosa Together, these findings suggest that desiccation tolerance evolved through a combination of gene duplications and network-level rewiring of existing seed desiccation pathways.
Related Topics
Concepts
Desiccation
Biology
Desiccation tolerance
Gene duplication
Gene
Cryptobiosis
Genome
Tandem exon duplication
Genetics
Gene family
Botany
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1105/tpc.18.00517
- http://www.plantcell.org/content/plantcell/30/12/2943.full.pdf
- OA Status
- bronze
- Cited By
- 65
- References
- 77
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2898478217
All OpenAlex metadata
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https://openalex.org/W2898478217Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1105/tpc.18.00517Digital Object Identifier
- Title
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Desiccation Tolerance Evolved through Gene Duplication and Network Rewiring in LinderniaWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2018Year of publication
- Publication date
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2018-10-25Full publication date if available
- Authors
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Robert VanBuren, Ching Man Wai, Jeremy Pardo, Valentino Giarola, Stefano Ambrosini, Xiaomin Song, Dorothea BartelsList of authors in order
- Landing page
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https://doi.org/10.1105/tpc.18.00517Publisher landing page
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https://www.plantcell.org/content/plantcell/30/12/2943.full.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
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bronzeOpen access status per OpenAlex
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https://www.plantcell.org/content/plantcell/30/12/2943.full.pdfDirect OA link when available
- Concepts
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Desiccation, Biology, Desiccation tolerance, Gene duplication, Gene, Cryptobiosis, Genome, Tandem exon duplication, Genetics, Gene family, BotanyTop concepts (fields/topics) attached by OpenAlex
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65Total citation count in OpenAlex
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2025: 8, 2024: 4, 2023: 8, 2022: 10, 2021: 10Per-year citation counts (last 5 years)
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77Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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