Development and implementation of nested single‐nucleotide polymorphism (SNP) assays for breeding and genetic research applications Article Swipe
Qijian Song
,
Charles Quigley
,
Ruifeng He
,
Dechun Wang
,
Henry T. Nguyen
,
Carrie Miranda
,
Zenglu Li
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1002/tpg2.20491
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1002/tpg2.20491
SoySNP50K and SoySNP6K are commonly used for soybean ( Glycine max ) genotyping. The SoySNP50K assay has been used to genetically analyze the entire USDA Soybean Germplasm Collection, while the SoySNP6K assay, containing a subset of 6000 single‐nucleotide polymorphisms (SNPs) from SoySNP50K, has been used for quantitative trait loci mapping of different traits. To meet the needs for genomic selection, selection of parents for crosses, and characterization of breeding populations, especially early selection of ideal offspring from thousands of lines, we developed two assays, SoySNP3K and SoySNP1K, containing 3072 and 1252 SNPs, respectively, based on SoySNP50K and SoySNP6K mark sets. These two assays also contained the trait markers reported or contributed by soybean breeders. The SNPs in the SoySNP3K are a subset from SoySNP6K, while the SNPs in the SoySNP1K are a subset from SoySNP3K. These SNPs were chosen to reduce the SNP number in the large linkage blocks while capturing as much of the haplotype diversity as possible. They are highly polymorphic and of high quality. The mean minor allele frequencies of the SNPs in the southern and northern US elites were 0.25 and 0.27 for SoySNP3K, respectively, and 0.29 and 0.33 for SoySNP1K. The selected SNPs are a valuable source for developing targeted amplicon sequencing assay or beadchip assay in soybean. SoySNP3K and SoySNP1K assays are commercialized by Illumina Inc. and AgriPlex Genomics, respectively. Together with SoySNP50K and SoySNP6K, a series of nested assays with different marker densities will serve as additional low‐cost genomic tools for genetic, genomic, and breeding research.
Related Topics
Concepts
Biology
Single-nucleotide polymorphism
Genetics
Genotyping
SNP genotyping
Quantitative trait locus
Tag SNP
Amplicon
Marker-assisted selection
SNP
Molecular Inversion Probe
Germplasm
Minor allele frequency
Computational biology
Genotype
Gene
Polymerase chain reaction
Agronomy
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1002/tpg2.20491
- https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/tpg2.20491
- OA Status
- gold
- Cited By
- 5
- References
- 49
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4400891848
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4400891848Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1002/tpg2.20491Digital Object Identifier
- Title
-
Development and implementation of nested single‐nucleotide polymorphism (SNP) assays for breeding and genetic research applicationsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-07-22Full publication date if available
- Authors
-
Qijian Song, Charles Quigley, Ruifeng He, Dechun Wang, Henry T. Nguyen, Carrie Miranda, Zenglu LiList of authors in order
- Landing page
-
https://doi.org/10.1002/tpg2.20491Publisher landing page
- PDF URL
-
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/tpg2.20491Direct link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/tpg2.20491Direct OA link when available
- Concepts
-
Biology, Single-nucleotide polymorphism, Genetics, Genotyping, SNP genotyping, Quantitative trait locus, Tag SNP, Amplicon, Marker-assisted selection, SNP, Molecular Inversion Probe, Germplasm, Minor allele frequency, Computational biology, Genotype, Gene, Polymerase chain reaction, AgronomyTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
5Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 3, 2024: 2Per-year citation counts (last 5 years)
- References (count)
-
49Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W4400891848 |
|---|---|
| doi | https://doi.org/10.1002/tpg2.20491 |
| ids.doi | https://doi.org/10.1002/tpg2.20491 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/39034885 |
| ids.openalex | https://openalex.org/W4400891848 |
| fwci | 3.91024538 |
| mesh[0].qualifier_ui | |
| mesh[0].descriptor_ui | D020641 |
| mesh[0].is_major_topic | True |
| mesh[0].qualifier_name | |
| mesh[0].descriptor_name | Polymorphism, Single Nucleotide |
| mesh[1].qualifier_ui | Q000235 |
| mesh[1].descriptor_ui | D013025 |
| mesh[1].is_major_topic | True |
| mesh[1].qualifier_name | genetics |
| mesh[1].descriptor_name | Glycine max |
| mesh[2].qualifier_ui | |
| mesh[2].descriptor_ui | D000069600 |
| mesh[2].is_major_topic | True |
| mesh[2].qualifier_name | |
| mesh[2].descriptor_name | Plant Breeding |
| mesh[3].qualifier_ui | |
| mesh[3].descriptor_ui | D040641 |
| mesh[3].is_major_topic | False |
| mesh[3].qualifier_name | |
| mesh[3].descriptor_name | Quantitative Trait Loci |
| mesh[4].qualifier_ui | |
| mesh[4].descriptor_ui | D005838 |
| mesh[4].is_major_topic | False |
| mesh[4].qualifier_name | |
| mesh[4].descriptor_name | Genotype |
| mesh[5].qualifier_ui | |
| mesh[5].descriptor_ui | D020641 |
| mesh[5].is_major_topic | True |
| mesh[5].qualifier_name | |
| mesh[5].descriptor_name | Polymorphism, Single Nucleotide |
| mesh[6].qualifier_ui | Q000235 |
| mesh[6].descriptor_ui | D013025 |
| mesh[6].is_major_topic | True |
| mesh[6].qualifier_name | genetics |
| mesh[6].descriptor_name | Glycine max |
| mesh[7].qualifier_ui | |
| mesh[7].descriptor_ui | D000069600 |
| mesh[7].is_major_topic | True |
| mesh[7].qualifier_name | |
| mesh[7].descriptor_name | Plant Breeding |
| mesh[8].qualifier_ui | |
| mesh[8].descriptor_ui | D040641 |
| mesh[8].is_major_topic | False |
| mesh[8].qualifier_name | |
| mesh[8].descriptor_name | Quantitative Trait Loci |
| mesh[9].qualifier_ui | |
| mesh[9].descriptor_ui | D005838 |
| mesh[9].is_major_topic | False |
| mesh[9].qualifier_name | |
| mesh[9].descriptor_name | Genotype |
| type | article |
| title | Development and implementation of nested single‐nucleotide polymorphism (SNP) assays for breeding and genetic research applications |
| biblio.issue | 3 |
| biblio.volume | 17 |
| biblio.last_page | e20491 |
| biblio.first_page | e20491 |
| topics[0].id | https://openalex.org/T12571 |
| topics[0].field.id | https://openalex.org/fields/11 |
| topics[0].field.display_name | Agricultural and Biological Sciences |
| topics[0].score | 0.9998999834060669 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1110 |
| topics[0].subfield.display_name | Plant Science |
| topics[0].display_name | Soybean genetics and cultivation |
| topics[1].id | https://openalex.org/T11470 |
| topics[1].field.id | https://openalex.org/fields/11 |
| topics[1].field.display_name | Agricultural and Biological Sciences |
| topics[1].score | 0.9926999807357788 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1110 |
| topics[1].subfield.display_name | Plant Science |
| topics[1].display_name | Legume Nitrogen Fixing Symbiosis |
| topics[2].id | https://openalex.org/T12771 |
| topics[2].field.id | https://openalex.org/fields/11 |
| topics[2].field.display_name | Agricultural and Biological Sciences |
| topics[2].score | 0.972599983215332 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1110 |
| topics[2].subfield.display_name | Plant Science |
| topics[2].display_name | Plant pathogens and resistance mechanisms |
| is_xpac | False |
| apc_list.value | 2400 |
| apc_list.currency | EUR |
| apc_list.value_usd | 2662 |
| apc_paid.value | 2400 |
| apc_paid.currency | EUR |
| apc_paid.value_usd | 2662 |
| concepts[0].id | https://openalex.org/C86803240 |
| concepts[0].level | 0 |
| concepts[0].score | 0.8521198034286499 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[0].display_name | Biology |
| concepts[1].id | https://openalex.org/C153209595 |
| concepts[1].level | 4 |
| concepts[1].score | 0.7392376661300659 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q501128 |
| concepts[1].display_name | Single-nucleotide polymorphism |
| concepts[2].id | https://openalex.org/C54355233 |
| concepts[2].level | 1 |
| concepts[2].score | 0.6790606379508972 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[2].display_name | Genetics |
| concepts[3].id | https://openalex.org/C31467283 |
| concepts[3].level | 4 |
| concepts[3].score | 0.6391711831092834 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q912147 |
| concepts[3].display_name | Genotyping |
| concepts[4].id | https://openalex.org/C163691529 |
| concepts[4].level | 5 |
| concepts[4].score | 0.638855516910553 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q7391886 |
| concepts[4].display_name | SNP genotyping |
| concepts[5].id | https://openalex.org/C81941488 |
| concepts[5].level | 3 |
| concepts[5].score | 0.5704318284988403 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q853421 |
| concepts[5].display_name | Quantitative trait locus |
| concepts[6].id | https://openalex.org/C55060382 |
| concepts[6].level | 5 |
| concepts[6].score | 0.5284141302108765 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q7675093 |
| concepts[6].display_name | Tag SNP |
| concepts[7].id | https://openalex.org/C8185291 |
| concepts[7].level | 4 |
| concepts[7].score | 0.4741054177284241 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q2844457 |
| concepts[7].display_name | Amplicon |
| concepts[8].id | https://openalex.org/C2779227213 |
| concepts[8].level | 4 |
| concepts[8].score | 0.4700832664966583 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q3954823 |
| concepts[8].display_name | Marker-assisted selection |
| concepts[9].id | https://openalex.org/C139275648 |
| concepts[9].level | 5 |
| concepts[9].score | 0.46934759616851807 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q17134011 |
| concepts[9].display_name | SNP |
| concepts[10].id | https://openalex.org/C59701697 |
| concepts[10].level | 5 |
| concepts[10].score | 0.465798944234848 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q6895959 |
| concepts[10].display_name | Molecular Inversion Probe |
| concepts[11].id | https://openalex.org/C2777461220 |
| concepts[11].level | 2 |
| concepts[11].score | 0.4621802866458893 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q589029 |
| concepts[11].display_name | Germplasm |
| concepts[12].id | https://openalex.org/C157410074 |
| concepts[12].level | 5 |
| concepts[12].score | 0.4130079746246338 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q6869145 |
| concepts[12].display_name | Minor allele frequency |
| concepts[13].id | https://openalex.org/C70721500 |
| concepts[13].level | 1 |
| concepts[13].score | 0.37438052892684937 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q177005 |
| concepts[13].display_name | Computational biology |
| concepts[14].id | https://openalex.org/C135763542 |
| concepts[14].level | 3 |
| concepts[14].score | 0.365877628326416 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q106016 |
| concepts[14].display_name | Genotype |
| concepts[15].id | https://openalex.org/C104317684 |
| concepts[15].level | 2 |
| concepts[15].score | 0.1962479054927826 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q7187 |
| concepts[15].display_name | Gene |
| concepts[16].id | https://openalex.org/C49105822 |
| concepts[16].level | 3 |
| concepts[16].score | 0.1091947853565216 |
| concepts[16].wikidata | https://www.wikidata.org/wiki/Q176996 |
| concepts[16].display_name | Polymerase chain reaction |
| concepts[17].id | https://openalex.org/C6557445 |
| concepts[17].level | 1 |
| concepts[17].score | 0.0 |
| concepts[17].wikidata | https://www.wikidata.org/wiki/Q173113 |
| concepts[17].display_name | Agronomy |
| keywords[0].id | https://openalex.org/keywords/biology |
| keywords[0].score | 0.8521198034286499 |
| keywords[0].display_name | Biology |
| keywords[1].id | https://openalex.org/keywords/single-nucleotide-polymorphism |
| keywords[1].score | 0.7392376661300659 |
| keywords[1].display_name | Single-nucleotide polymorphism |
| keywords[2].id | https://openalex.org/keywords/genetics |
| keywords[2].score | 0.6790606379508972 |
| keywords[2].display_name | Genetics |
| keywords[3].id | https://openalex.org/keywords/genotyping |
| keywords[3].score | 0.6391711831092834 |
| keywords[3].display_name | Genotyping |
| keywords[4].id | https://openalex.org/keywords/snp-genotyping |
| keywords[4].score | 0.638855516910553 |
| keywords[4].display_name | SNP genotyping |
| keywords[5].id | https://openalex.org/keywords/quantitative-trait-locus |
| keywords[5].score | 0.5704318284988403 |
| keywords[5].display_name | Quantitative trait locus |
| keywords[6].id | https://openalex.org/keywords/tag-snp |
| keywords[6].score | 0.5284141302108765 |
| keywords[6].display_name | Tag SNP |
| keywords[7].id | https://openalex.org/keywords/amplicon |
| keywords[7].score | 0.4741054177284241 |
| keywords[7].display_name | Amplicon |
| keywords[8].id | https://openalex.org/keywords/marker-assisted-selection |
| keywords[8].score | 0.4700832664966583 |
| keywords[8].display_name | Marker-assisted selection |
| keywords[9].id | https://openalex.org/keywords/snp |
| keywords[9].score | 0.46934759616851807 |
| keywords[9].display_name | SNP |
| keywords[10].id | https://openalex.org/keywords/molecular-inversion-probe |
| keywords[10].score | 0.465798944234848 |
| keywords[10].display_name | Molecular Inversion Probe |
| keywords[11].id | https://openalex.org/keywords/germplasm |
| keywords[11].score | 0.4621802866458893 |
| keywords[11].display_name | Germplasm |
| keywords[12].id | https://openalex.org/keywords/minor-allele-frequency |
| keywords[12].score | 0.4130079746246338 |
| keywords[12].display_name | Minor allele frequency |
| keywords[13].id | https://openalex.org/keywords/computational-biology |
| keywords[13].score | 0.37438052892684937 |
| keywords[13].display_name | Computational biology |
| keywords[14].id | https://openalex.org/keywords/genotype |
| keywords[14].score | 0.365877628326416 |
| keywords[14].display_name | Genotype |
| keywords[15].id | https://openalex.org/keywords/gene |
| keywords[15].score | 0.1962479054927826 |
| keywords[15].display_name | Gene |
| keywords[16].id | https://openalex.org/keywords/polymerase-chain-reaction |
| keywords[16].score | 0.1091947853565216 |
| keywords[16].display_name | Polymerase chain reaction |
| language | en |
| locations[0].id | doi:10.1002/tpg2.20491 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S84695101 |
| locations[0].source.issn | 1940-3372 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 1940-3372 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | The Plant Genome |
| locations[0].source.host_organization | https://openalex.org/P4310316504 |
| locations[0].source.host_organization_name | Crop Science Society of America |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310316504 |
| locations[0].source.host_organization_lineage_names | Crop Science Society of America |
| locations[0].license | cc-by |
| locations[0].pdf_url | https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/tpg2.20491 |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | The Plant Genome |
| locations[0].landing_page_url | https://doi.org/10.1002/tpg2.20491 |
| locations[1].id | pmid:39034885 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | The plant genome |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/39034885 |
| locations[2].id | pmh:oai:doaj.org/article:35dfd28f18884b548b84970f39c06836 |
| locations[2].is_oa | False |
| locations[2].source.id | https://openalex.org/S4306401280 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | DOAJ (DOAJ: Directory of Open Access Journals) |
| locations[2].source.host_organization | |
| locations[2].source.host_organization_name | |
| locations[2].license | |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | article |
| locations[2].license_id | |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | The Plant Genome, Vol 17, Iss 3, Pp n/a-n/a (2024) |
| locations[2].landing_page_url | https://doaj.org/article/35dfd28f18884b548b84970f39c06836 |
| indexed_in | crossref, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5076252626 |
| authorships[0].author.orcid | https://orcid.org/0000-0001-5103-4954 |
| authorships[0].author.display_name | Qijian Song |
| authorships[0].countries | US |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I4210125976 |
| authorships[0].affiliations[0].raw_affiliation_string | USDA‐ARS, Soybean Genomics & Improvement Laboratory Beltsville Maryland USA |
| authorships[0].institutions[0].id | https://openalex.org/I4210125976 |
| authorships[0].institutions[0].ror | https://ror.org/03b08sh51 |
| authorships[0].institutions[0].type | facility |
| authorships[0].institutions[0].lineage | https://openalex.org/I1312222531, https://openalex.org/I1336096307, https://openalex.org/I4210125976, https://openalex.org/I4210138094 |
| authorships[0].institutions[0].country_code | US |
| authorships[0].institutions[0].display_name | Beltsville Agricultural Research Center |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Qijian Song |
| authorships[0].is_corresponding | True |
| authorships[0].raw_affiliation_strings | USDA‐ARS, Soybean Genomics & Improvement Laboratory Beltsville Maryland USA |
| authorships[1].author.id | https://openalex.org/A5026834841 |
| authorships[1].author.orcid | |
| authorships[1].author.display_name | Charles Quigley |
| authorships[1].countries | US |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I4210125976 |
| authorships[1].affiliations[0].raw_affiliation_string | USDA‐ARS, Soybean Genomics & Improvement Laboratory Beltsville Maryland USA |
| authorships[1].institutions[0].id | https://openalex.org/I4210125976 |
| authorships[1].institutions[0].ror | https://ror.org/03b08sh51 |
| authorships[1].institutions[0].type | facility |
| authorships[1].institutions[0].lineage | https://openalex.org/I1312222531, https://openalex.org/I1336096307, https://openalex.org/I4210125976, https://openalex.org/I4210138094 |
| authorships[1].institutions[0].country_code | US |
| authorships[1].institutions[0].display_name | Beltsville Agricultural Research Center |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Charles Quigley |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | USDA‐ARS, Soybean Genomics & Improvement Laboratory Beltsville Maryland USA |
| authorships[2].author.id | https://openalex.org/A5100853395 |
| authorships[2].author.orcid | https://orcid.org/0000-0002-9013-7910 |
| authorships[2].author.display_name | Ruifeng He |
| authorships[2].countries | US |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I4210125976 |
| authorships[2].affiliations[0].raw_affiliation_string | USDA‐ARS, Soybean Genomics & Improvement Laboratory Beltsville Maryland USA |
| authorships[2].institutions[0].id | https://openalex.org/I4210125976 |
| authorships[2].institutions[0].ror | https://ror.org/03b08sh51 |
| authorships[2].institutions[0].type | facility |
| authorships[2].institutions[0].lineage | https://openalex.org/I1312222531, https://openalex.org/I1336096307, https://openalex.org/I4210125976, https://openalex.org/I4210138094 |
| authorships[2].institutions[0].country_code | US |
| authorships[2].institutions[0].display_name | Beltsville Agricultural Research Center |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Ruifeng He |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | USDA‐ARS, Soybean Genomics & Improvement Laboratory Beltsville Maryland USA |
| authorships[3].author.id | https://openalex.org/A5075988845 |
| authorships[3].author.orcid | https://orcid.org/0000-0003-1858-4342 |
| authorships[3].author.display_name | Dechun Wang |
| authorships[3].countries | US |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I87216513 |
| authorships[3].affiliations[0].raw_affiliation_string | Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan, USA |
| authorships[3].institutions[0].id | https://openalex.org/I87216513 |
| authorships[3].institutions[0].ror | https://ror.org/05hs6h993 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I87216513 |
| authorships[3].institutions[0].country_code | US |
| authorships[3].institutions[0].display_name | Michigan State University |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Dechun Wang |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan, USA |
| authorships[4].author.id | https://openalex.org/A5045241930 |
| authorships[4].author.orcid | https://orcid.org/0000-0002-7597-1800 |
| authorships[4].author.display_name | Henry T. Nguyen |
| authorships[4].countries | US |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I76835614 |
| authorships[4].affiliations[0].raw_affiliation_string | Molecular Genetics and Soybean Genomics Laboratory, Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA |
| authorships[4].institutions[0].id | https://openalex.org/I76835614 |
| authorships[4].institutions[0].ror | https://ror.org/02ymw8z06 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I76835614 |
| authorships[4].institutions[0].country_code | US |
| authorships[4].institutions[0].display_name | University of Missouri |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Henry Nguyen |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | Molecular Genetics and Soybean Genomics Laboratory, Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA |
| authorships[5].author.id | https://openalex.org/A5011195313 |
| authorships[5].author.orcid | https://orcid.org/0000-0002-7535-3404 |
| authorships[5].author.display_name | Carrie Miranda |
| authorships[5].countries | US |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I57328836 |
| authorships[5].affiliations[0].raw_affiliation_string | Department of Plant Sciences, North Dakota State University, Fargo, North Dakota, USA |
| authorships[5].institutions[0].id | https://openalex.org/I57328836 |
| authorships[5].institutions[0].ror | https://ror.org/05h1bnb22 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I57328836 |
| authorships[5].institutions[0].country_code | US |
| authorships[5].institutions[0].display_name | North Dakota State University |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Carrie Miranda |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | Department of Plant Sciences, North Dakota State University, Fargo, North Dakota, USA |
| authorships[6].author.id | https://openalex.org/A5027234368 |
| authorships[6].author.orcid | https://orcid.org/0000-0003-4114-9509 |
| authorships[6].author.display_name | Zenglu Li |
| authorships[6].countries | US |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I165733156 |
| authorships[6].affiliations[0].raw_affiliation_string | Institute of Plant Breeding, Genetics and Genomics/Department of Crop and Soil Sciences, University of Georgia, Athens, Georgia, USA |
| authorships[6].institutions[0].id | https://openalex.org/I165733156 |
| authorships[6].institutions[0].ror | https://ror.org/00te3t702 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I165733156 |
| authorships[6].institutions[0].country_code | US |
| authorships[6].institutions[0].display_name | University of Georgia |
| authorships[6].author_position | last |
| authorships[6].raw_author_name | Zenglu Li |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | Institute of Plant Breeding, Genetics and Genomics/Department of Crop and Soil Sciences, University of Georgia, Athens, Georgia, USA |
| has_content.pdf | True |
| has_content.grobid_xml | False |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/tpg2.20491 |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | Development and implementation of nested single‐nucleotide polymorphism (SNP) assays for breeding and genetic research applications |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T12571 |
| primary_topic.field.id | https://openalex.org/fields/11 |
| primary_topic.field.display_name | Agricultural and Biological Sciences |
| primary_topic.score | 0.9998999834060669 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1110 |
| primary_topic.subfield.display_name | Plant Science |
| primary_topic.display_name | Soybean genetics and cultivation |
| related_works | https://openalex.org/W2412475779, https://openalex.org/W1504890006, https://openalex.org/W2082313322, https://openalex.org/W3139651602, https://openalex.org/W1588942077, https://openalex.org/W2517316711, https://openalex.org/W2202951024, https://openalex.org/W2413478641, https://openalex.org/W2111838693, https://openalex.org/W2331649876 |
| cited_by_count | 5 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 3 |
| counts_by_year[1].year | 2024 |
| counts_by_year[1].cited_by_count | 2 |
| locations_count | 3 |
| best_oa_location.id | doi:10.1002/tpg2.20491 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S84695101 |
| best_oa_location.source.issn | 1940-3372 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 1940-3372 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | The Plant Genome |
| best_oa_location.source.host_organization | https://openalex.org/P4310316504 |
| best_oa_location.source.host_organization_name | Crop Science Society of America |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310316504 |
| best_oa_location.source.host_organization_lineage_names | Crop Science Society of America |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/tpg2.20491 |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | The Plant Genome |
| best_oa_location.landing_page_url | https://doi.org/10.1002/tpg2.20491 |
| primary_location.id | doi:10.1002/tpg2.20491 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S84695101 |
| primary_location.source.issn | 1940-3372 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 1940-3372 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | The Plant Genome |
| primary_location.source.host_organization | https://openalex.org/P4310316504 |
| primary_location.source.host_organization_name | Crop Science Society of America |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310316504 |
| primary_location.source.host_organization_lineage_names | Crop Science Society of America |
| primary_location.license | cc-by |
| primary_location.pdf_url | https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/tpg2.20491 |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | The Plant Genome |
| primary_location.landing_page_url | https://doi.org/10.1002/tpg2.20491 |
| publication_date | 2024-07-22 |
| publication_year | 2024 |
| referenced_works | https://openalex.org/W3027710716, https://openalex.org/W2213151699, https://openalex.org/W2665509242, https://openalex.org/W2611209364, https://openalex.org/W4220657877, https://openalex.org/W6941554485, https://openalex.org/W2770780708, https://openalex.org/W2969522081, https://openalex.org/W2168002090, https://openalex.org/W2776177119, https://openalex.org/W7064750784, https://openalex.org/W2479490943, https://openalex.org/W2133980123, https://openalex.org/W4378531355, https://openalex.org/W4302287432, https://openalex.org/W2980935430, https://openalex.org/W3015722212, https://openalex.org/W4387033322, https://openalex.org/W4378515654, https://openalex.org/W2319914235, https://openalex.org/W2112484080, https://openalex.org/W2161633633, https://openalex.org/W2346090657, https://openalex.org/W1989785009, https://openalex.org/W3193156613, https://openalex.org/W2297710537, https://openalex.org/W2012986985, https://openalex.org/W6653783599, https://openalex.org/W2093319611, https://openalex.org/W1820802385, https://openalex.org/W2231593807, https://openalex.org/W3048142151, https://openalex.org/W4390008872, https://openalex.org/W2494930801, https://openalex.org/W3138597532, https://openalex.org/W1996547052, https://openalex.org/W2969341995, https://openalex.org/W2105909203, https://openalex.org/W2165295828, https://openalex.org/W1909023867, https://openalex.org/W2156480474, https://openalex.org/W2789357982, https://openalex.org/W2060705274, https://openalex.org/W2163267756, https://openalex.org/W1947954067, https://openalex.org/W2078552577, https://openalex.org/W2734954463, https://openalex.org/W2093409211, https://openalex.org/W2942240084 |
| referenced_works_count | 49 |
| abstract_inverted_index.( | 9 |
| abstract_inverted_index.) | 12 |
| abstract_inverted_index.a | 34, 121, 132, 200, 232 |
| abstract_inverted_index.To | 54 |
| abstract_inverted_index.US | 181 |
| abstract_inverted_index.as | 152, 158, 243 |
| abstract_inverted_index.by | 112, 220 |
| abstract_inverted_index.in | 117, 128, 145, 176, 212 |
| abstract_inverted_index.of | 36, 51, 62, 68, 74, 79, 154, 165, 173, 234 |
| abstract_inverted_index.on | 95 |
| abstract_inverted_index.or | 110, 209 |
| abstract_inverted_index.to | 20, 140 |
| abstract_inverted_index.we | 81 |
| abstract_inverted_index.SNP | 143 |
| abstract_inverted_index.The | 14, 115, 168, 196 |
| abstract_inverted_index.and | 2, 66, 86, 90, 97, 164, 179, 185, 190, 192, 215, 223, 230, 251 |
| abstract_inverted_index.are | 4, 120, 131, 161, 199, 218 |
| abstract_inverted_index.for | 7, 46, 58, 64, 187, 194, 203, 248 |
| abstract_inverted_index.has | 17, 43 |
| abstract_inverted_index.max | 11 |
| abstract_inverted_index.the | 23, 30, 56, 106, 118, 126, 129, 142, 146, 155, 174, 177 |
| abstract_inverted_index.two | 83, 102 |
| abstract_inverted_index.0.25 | 184 |
| abstract_inverted_index.0.27 | 186 |
| abstract_inverted_index.0.29 | 191 |
| abstract_inverted_index.0.33 | 193 |
| abstract_inverted_index.1252 | 91 |
| abstract_inverted_index.3072 | 89 |
| abstract_inverted_index.6000 | 37 |
| abstract_inverted_index.Inc. | 222 |
| abstract_inverted_index.SNPs | 116, 127, 137, 175, 198 |
| abstract_inverted_index.They | 160 |
| abstract_inverted_index.USDA | 25 |
| abstract_inverted_index.also | 104 |
| abstract_inverted_index.been | 18, 44 |
| abstract_inverted_index.from | 41, 77, 123, 134 |
| abstract_inverted_index.high | 166 |
| abstract_inverted_index.loci | 49 |
| abstract_inverted_index.mark | 99 |
| abstract_inverted_index.mean | 169 |
| abstract_inverted_index.meet | 55 |
| abstract_inverted_index.much | 153 |
| abstract_inverted_index.used | 6, 19, 45 |
| abstract_inverted_index.were | 138, 183 |
| abstract_inverted_index.will | 241 |
| abstract_inverted_index.with | 228, 237 |
| abstract_inverted_index.SNPs, | 92 |
| abstract_inverted_index.These | 101, 136 |
| abstract_inverted_index.assay | 16, 208, 211 |
| abstract_inverted_index.based | 94 |
| abstract_inverted_index.early | 72 |
| abstract_inverted_index.ideal | 75 |
| abstract_inverted_index.large | 147 |
| abstract_inverted_index.minor | 170 |
| abstract_inverted_index.needs | 57 |
| abstract_inverted_index.serve | 242 |
| abstract_inverted_index.sets. | 100 |
| abstract_inverted_index.tools | 247 |
| abstract_inverted_index.trait | 48, 107 |
| abstract_inverted_index.while | 29, 125, 150 |
| abstract_inverted_index.(SNPs) | 40 |
| abstract_inverted_index.allele | 171 |
| abstract_inverted_index.assay, | 32 |
| abstract_inverted_index.assays | 103, 217, 236 |
| abstract_inverted_index.blocks | 149 |
| abstract_inverted_index.chosen | 139 |
| abstract_inverted_index.elites | 182 |
| abstract_inverted_index.entire | 24 |
| abstract_inverted_index.highly | 162 |
| abstract_inverted_index.lines, | 80 |
| abstract_inverted_index.marker | 239 |
| abstract_inverted_index.nested | 235 |
| abstract_inverted_index.number | 144 |
| abstract_inverted_index.reduce | 141 |
| abstract_inverted_index.series | 233 |
| abstract_inverted_index.source | 202 |
| abstract_inverted_index.subset | 35, 122, 133 |
| abstract_inverted_index.Glycine | 10 |
| abstract_inverted_index.Soybean | 26 |
| abstract_inverted_index.analyze | 22 |
| abstract_inverted_index.assays, | 84 |
| abstract_inverted_index.genomic | 59, 246 |
| abstract_inverted_index.linkage | 148 |
| abstract_inverted_index.mapping | 50 |
| abstract_inverted_index.markers | 108 |
| abstract_inverted_index.parents | 63 |
| abstract_inverted_index.soybean | 8, 113 |
| abstract_inverted_index.traits. | 53 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.AgriPlex | 224 |
| abstract_inverted_index.Illumina | 221 |
| abstract_inverted_index.SoySNP1K | 130, 216 |
| abstract_inverted_index.SoySNP3K | 85, 119, 214 |
| abstract_inverted_index.SoySNP6K | 3, 31, 98 |
| abstract_inverted_index.Together | 227 |
| abstract_inverted_index.amplicon | 206 |
| abstract_inverted_index.beadchip | 210 |
| abstract_inverted_index.breeding | 69, 252 |
| abstract_inverted_index.commonly | 5 |
| abstract_inverted_index.crosses, | 65 |
| abstract_inverted_index.genetic, | 249 |
| abstract_inverted_index.genomic, | 250 |
| abstract_inverted_index.northern | 180 |
| abstract_inverted_index.quality. | 167 |
| abstract_inverted_index.reported | 109 |
| abstract_inverted_index.selected | 197 |
| abstract_inverted_index.southern | 178 |
| abstract_inverted_index.soybean. | 213 |
| abstract_inverted_index.targeted | 205 |
| abstract_inverted_index.valuable | 201 |
| abstract_inverted_index.Genomics, | 225 |
| abstract_inverted_index.Germplasm | 27 |
| abstract_inverted_index.SoySNP1K, | 87 |
| abstract_inverted_index.SoySNP1K. | 195 |
| abstract_inverted_index.SoySNP3K, | 188 |
| abstract_inverted_index.SoySNP3K. | 135 |
| abstract_inverted_index.SoySNP50K | 1, 15, 96, 229 |
| abstract_inverted_index.SoySNP6K, | 124, 231 |
| abstract_inverted_index.breeders. | 114 |
| abstract_inverted_index.capturing | 151 |
| abstract_inverted_index.contained | 105 |
| abstract_inverted_index.densities | 240 |
| abstract_inverted_index.developed | 82 |
| abstract_inverted_index.different | 52, 238 |
| abstract_inverted_index.diversity | 157 |
| abstract_inverted_index.haplotype | 156 |
| abstract_inverted_index.offspring | 76 |
| abstract_inverted_index.possible. | 159 |
| abstract_inverted_index.research. | 253 |
| abstract_inverted_index.selection | 61, 73 |
| abstract_inverted_index.thousands | 78 |
| abstract_inverted_index.SoySNP50K, | 42 |
| abstract_inverted_index.additional | 244 |
| abstract_inverted_index.containing | 33, 88 |
| abstract_inverted_index.developing | 204 |
| abstract_inverted_index.especially | 71 |
| abstract_inverted_index.low‐cost | 245 |
| abstract_inverted_index.selection, | 60 |
| abstract_inverted_index.sequencing | 207 |
| abstract_inverted_index.Collection, | 28 |
| abstract_inverted_index.contributed | 111 |
| abstract_inverted_index.frequencies | 172 |
| abstract_inverted_index.genetically | 21 |
| abstract_inverted_index.genotyping. | 13 |
| abstract_inverted_index.polymorphic | 163 |
| abstract_inverted_index.populations, | 70 |
| abstract_inverted_index.quantitative | 47 |
| abstract_inverted_index.polymorphisms | 39 |
| abstract_inverted_index.respectively, | 93, 189 |
| abstract_inverted_index.respectively. | 226 |
| abstract_inverted_index.commercialized | 219 |
| abstract_inverted_index.characterization | 67 |
| abstract_inverted_index.single‐nucleotide | 38 |
| cited_by_percentile_year.max | 97 |
| cited_by_percentile_year.min | 94 |
| corresponding_author_ids | https://openalex.org/A5076252626 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 7 |
| corresponding_institution_ids | https://openalex.org/I4210125976 |
| citation_normalized_percentile.value | 0.93094907 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |