Different trajectories of polyploidization shape the genomic landscape of theBrettanomyces bruxellensisyeast species Article Swipe
Chris Eberlein
,
Omar Abou Saada
,
Anne Friedrich
,
Warren Albertin
,
Joseph Schacherer
·
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.1101/2021.02.11.430840
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.1101/2021.02.11.430840
Polyploidization events are observed across the tree of life and occurred in many fungi, plant and animal species. Polyploidy is thought to be an important source of speciation and tumorigenesis. However, the origins of polyploid populations are not always clear and little is known about the precise nature and structure of their complex genome. Using a long-read sequencing strategy, we sequenced a large number of isolates from the Brettanomyces bruxellensis yeast species, which is found in anthropized environments ( e.g. beer, contaminant of wine, kombucha and ethanol production) and characterized by several polyploid subpopulations. To reconstruct the polyploid genomes, we phased them by using different strategies and we found that each subpopulation had a unique polyploidization history with distinct trajectories. The polyploid genomes contain either genetically closely related (with a genetic divergence < 1%) or diverged copies (> 3%), indicating auto- as well as allopolyploidization events. These latest events have occurred independently with a specific and unique donor in each of the polyploid subpopulations, and exclude the known Brettanomyces sister species as possible donors. Finally, loss of heterozygosity events have shaped the structure of these polyploid genomes and underline their dynamic. Overall, our study highlights the multiplicity of the trajectories leading to polyploid genomes within a same species.
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Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2021.02.11.430840
- https://www.biorxiv.org/content/biorxiv/early/2021/02/12/2021.02.11.430840.full.pdf
- OA Status
- green
- Cited By
- 1
- References
- 76
- Related Works
- 10
- OpenAlex ID
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All OpenAlex metadata
Raw OpenAlex JSON
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- DOI
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- Title
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Different trajectories of polyploidization shape the genomic landscape of theBrettanomyces bruxellensisyeast speciesWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2021Year of publication
- Publication date
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2021-02-12Full publication date if available
- Authors
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Chris Eberlein, Omar Abou Saada, Anne Friedrich, Warren Albertin, Joseph SchachererList of authors in order
- Landing page
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https://doi.org/10.1101/2021.02.11.430840Publisher landing page
- PDF URL
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https://www.biorxiv.org/content/biorxiv/early/2021/02/12/2021.02.11.430840.full.pdfDirect link to full text PDF
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YesWhether a free full text is available
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2021/02/12/2021.02.11.430840.full.pdfDirect OA link when available
- Concepts
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Polyploid, Biology, Genome, Evolutionary biology, Ploidy, Genome size, Genetics, GeneTop concepts (fields/topics) attached by OpenAlex
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1Total citation count in OpenAlex
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10Other works algorithmically related by OpenAlex
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