Diversity in Recombination Hotspot Characteristics and Gene Structure Shape Fine-Scale Recombination Patterns in Plant Genomes Article Swipe
Thomas Brazier
,
Sylvain Glémin
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/molbev/msae183
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/molbev/msae183
During the meiosis of many eukaryote species, crossovers tend to occur within narrow regions called recombination hotspots. In plants, it is generally thought that gene regulatory sequences, especially promoters and 5′ to 3′ untranslated regions, are enriched in hotspots, but this has been characterized in a handful of species only. We also lack a clear description of fine-scale variation in recombination rates within genic regions and little is known about hotspot position and intensity in plants. To address this question, we constructed fine-scale recombination maps from genetic polymorphism data and inferred recombination hotspots in 11 plant species. We detected gradients of recombination in genic regions in most species, yet gradients varied in intensity and shape depending on specific hotspot locations and gene structure. To further characterize recombination gradients, we decomposed them according to gene structure by rank and number of exons. We generalized the previously observed pattern that recombination hotspots are organized around the boundaries of coding sequences, especially 5′ promoters. However, our results also provided new insight into the relative importance of the 3′ end of genes in some species and the possible location of hotspots away from genic regions in some species. Variation among species seemed driven more by hotspot location among and within genes than by differences in size or intensity among species. Our results shed light on the variation in recombination rates at a very fine scale, revealing the diversity and complexity of genic recombination gradients emerging from the interaction between hotspot location and gene structure.
Related Topics
Concepts
Biology
Recombination
Ectopic recombination
Evolutionary biology
Hotspot (geology)
Genetics
Gene
Homologous recombination
Genome
Genetic recombination
Geophysics
Geology
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/molbev/msae183
- OA Status
- gold
- Cited By
- 9
- References
- 86
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4402678112
All OpenAlex metadata
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- OpenAlex ID
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https://openalex.org/W4402678112Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/molbev/msae183Digital Object Identifier
- Title
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Diversity in Recombination Hotspot Characteristics and Gene Structure Shape Fine-Scale Recombination Patterns in Plant GenomesWork title
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
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2024-09-01Full publication date if available
- Authors
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Thomas Brazier, Sylvain GléminList of authors in order
- Landing page
-
https://doi.org/10.1093/molbev/msae183Publisher landing page
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
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https://doi.org/10.1093/molbev/msae183Direct OA link when available
- Concepts
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Biology, Recombination, Ectopic recombination, Evolutionary biology, Hotspot (geology), Genetics, Gene, Homologous recombination, Genome, Genetic recombination, Geophysics, GeologyTop concepts (fields/topics) attached by OpenAlex
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9Total citation count in OpenAlex
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2025: 7, 2024: 2Per-year citation counts (last 5 years)
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86Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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