DNA Translocation through Hybrid Bilayer Nanopores Article Swipe
R. Balasubramanian
,
Sohini Pal
,
Himanshu Joshi
,
Anjana Rao
,
Akshay Naik
,
Manoj M. Varma
,
Banani Chakraborty
,
Prabal K. Maiti
·
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1021/acs.jpcc.9b00399
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1021/acs.jpcc.9b00399
Pore functionalization has been explored by several groups as a strategy to control DNA translocation through solid-state nanopores. Here we present a hybrid nanopore system consisting of single-layer graphene and a DNA origami layer to achieve base-selective control of DNA translocation rate through aligned nanopores of the two layers. This is achieved by incorporating unpaired dangling bases called overhangs to the origami near the pore region. Molecular dynamics simulations were used to optimize the design of the origami nanopore and the overhangs. Specifically, we considered the influence of the number and spatial distribution of overhangs on translocation times. The simulations revealed that specific interactions between the overhangs and the translocating single-stranded DNA resulted in base-specific residence times.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1021/acs.jpcc.9b00399
- OA Status
- green
- Cited By
- 24
- References
- 63
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2942321182
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- OpenAlex ID
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https://openalex.org/W2942321182Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1021/acs.jpcc.9b00399Digital Object Identifier
- Title
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DNA Translocation through Hybrid Bilayer NanoporesWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2019Year of publication
- Publication date
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2019-04-23Full publication date if available
- Authors
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R. Balasubramanian, Sohini Pal, Himanshu Joshi, Anjana Rao, Akshay Naik, Manoj M. Varma, Banani Chakraborty, Prabal K. MaitiList of authors in order
- Landing page
-
https://doi.org/10.1021/acs.jpcc.9b00399Publisher landing page
- Open access
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YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
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https://www.ncbi.nlm.nih.gov/pmc/articles/6636640Direct OA link when available
- Concepts
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Nanopore, Nanotechnology, Materials science, DNA, Chromosomal translocation, DNA origami, Molecular dynamics, Chemical physics, Biophysics, Chemistry, Nanostructure, Biology, Computational chemistry, Biochemistry, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
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24Total citation count in OpenAlex
- Citations by year (recent)
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2025: 4, 2024: 4, 2023: 1, 2022: 4, 2021: 2Per-year citation counts (last 5 years)
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63Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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