Dynamic patterns of repeats and retrotransposons in the centromeres of Humulus lupulus L. Article Swipe
Lucie Hořáková
,
Pavel Jedlička
,
Radim Čegan
,
Pavla Navrátilová
,
Hiroyuki Tanaka
,
Atsushi Toyoda
,
Takehiko Itoh
,
Takashi Akagi
,
Eiichiro Ono
,
Vojtěch Hudzieczek
,
Josef Patzak
,
Jan Šafář
,
Roman Hobza
,
Václav Bačovský
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1111/nph.70380
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1111/nph.70380
Summary The centromere has a conserved function across eukaryotes; however, the associated DNA sequences exhibit remarkable diversity in both size and structure. In plants, some species possess well‐defined centromeres dominated by tandem satellite repeats and centromeric retrotransposons, while others have centromeric regions composed almost entirely of retrotransposons. Using a combination of bioinformatic, molecular, and cytogenetic approaches, we analyzed the centromeric landscape of Humulus lupulus . We identified novel centromeric repeats and characterized two types of centromeric organization. Cytogenetic localization on metaphase chromosomes confirmed the genomic distribution of the major repeats and revealed unique centromeric organization specifically on chromosomes 2, 8, and Y. Two centromeric types are composed of the major repeats SaazCEN and SaazCRM1 (Ty3/ Gypsy ) which are further accompanied by chromosome‐specific centromeric satellites, Saaz40, Saaz293, Saaz85, and HuluTR120. Chromosome 2 displays unbalanced segregation during mitosis and meiosis, implicating an important role for its centromere structure in segregation patterns. Moreover, chromosome 2‐specific centromeric repeat Saaz293 is a new marker for studying aneuploidy in hops. Our findings provide new insights into chromosome segregation in hops and highlight the diversity and complexity of the centromere organization in H. lupulus .
Related Topics
Concepts
Centromere
Retrotransposon
Humulus lupulus
Biology
Genetics
Chromosome
Meiosis
Eukaryotic chromosome fine structure
Tandem repeat
Repeated sequence
Genome
Transposable element
Gene
Horticulture
Pepper
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1111/nph.70380
- OA Status
- hybrid
- References
- 93
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4412487170
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4412487170Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1111/nph.70380Digital Object Identifier
- Title
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Dynamic patterns of repeats and retrotransposons in the centromeres of Humulus lupulus L.Work title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
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2025-07-15Full publication date if available
- Authors
-
Lucie Hořáková, Pavel Jedlička, Radim Čegan, Pavla Navrátilová, Hiroyuki Tanaka, Atsushi Toyoda, Takehiko Itoh, Takashi Akagi, Eiichiro Ono, Vojtěch Hudzieczek, Josef Patzak, Jan Šafář, Roman Hobza, Václav BačovskýList of authors in order
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https://doi.org/10.1111/nph.70380Publisher landing page
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YesWhether a free full text is available
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hybridOpen access status per OpenAlex
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https://doi.org/10.1111/nph.70380Direct OA link when available
- Concepts
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Centromere, Retrotransposon, Humulus lupulus, Biology, Genetics, Chromosome, Meiosis, Eukaryotic chromosome fine structure, Tandem repeat, Repeated sequence, Genome, Transposable element, Gene, Horticulture, PepperTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
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93Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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