E3 SUMO ligase SIZ1 splicing variants localize and function according to external conditions Article Swipe
J.S. Kwak
,
Jong Tae Song
,
Hak Soo Seo
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/plphys/kiae108
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/plphys/kiae108
SIZ1 (SAP and MIZ1) is a member of the Siz/PIAS-type RING family of E3 SUMO (small ubiquitin-related modifier) ligases that play key roles in growth, development, and stress responses in plant and animal systems. Nevertheless, splicing variants of SIZ1 have not yet been characterized. Here, we identified four splicing variants of Arabidopsis (Arabidopsis thaliana) SIZ1, which encode three different protein isoforms. The SIZ1 gene encodes an 873-amino acid (aa) protein. Among the four SIZ1 splicing variants (SSVs), SSV1 and SSV4 encode identical 885 aa proteins; SSV2 encodes an 832 aa protein; and SSV3 encodes an 884 aa protein. SSV2 mainly localized to the plasma membrane, whereas SIZ1, SSV1/SSV4, and SSV3 localized to the nucleus. Interestingly, SIZ1 and all SSVs exhibited similar E3 SUMO ligase activities and preferred SUMO1 and SUMO2 for their E3 ligase activity. Transcript levels of SSV2 were substantially increased by heat treatment, while those of SSV1, SSV3, and SSV4 transcripts were unaffected by various abiotic stresses. SSV2 directly interacted with and sumoylated cyclic nucleotide-gated ion channel 6 (CNGC6), a positive thermotolerance regulator, enhancing the stability of CNGC6. Notably, transgenic siz1-2 mutants expressing SSV2 exhibited greater heat stress tolerance than wild-type plants, whereas those expressing SIZ1 were sensitive to heat stress. Furthermore, transgenic cngc6 plants overaccumulating a mutated mCNGC6 protein (K347R, a mutation at the sumoylation site) were sensitive to heat stress, similar to the cngc6 mutants, while transgenic cngc6 plants overaccumulating CNGC6 exhibited restored heat tolerance. Together, we propose that alternative splicing is an important mechanism that regulates the function of SSVs during development or under adverse conditions, including heat stress.
Related Topics
Concepts
Arabidopsis
Ubiquitin ligase
Biology
RNA splicing
Arabidopsis thaliana
Alternative splicing
Genetics
Mutant
SUMO protein
Cell biology
DNA ligase
Transgene
Abiotic stress
Gene isoform
Gene
Ubiquitin
RNA
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/plphys/kiae108
- https://academic.oup.com/plphys/advance-article-pdf/doi/10.1093/plphys/kiae108/57001022/kiae108.pdf
- OA Status
- hybrid
- Cited By
- 4
- References
- 66
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4392914039
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4392914039Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/plphys/kiae108Digital Object Identifier
- Title
-
E3 SUMO ligase SIZ1 splicing variants localize and function according to external conditionsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-03-18Full publication date if available
- Authors
-
J.S. Kwak, Jong Tae Song, Hak Soo SeoList of authors in order
- Landing page
-
https://doi.org/10.1093/plphys/kiae108Publisher landing page
- PDF URL
-
https://academic.oup.com/plphys/advance-article-pdf/doi/10.1093/plphys/kiae108/57001022/kiae108.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
hybridOpen access status per OpenAlex
- OA URL
-
https://academic.oup.com/plphys/advance-article-pdf/doi/10.1093/plphys/kiae108/57001022/kiae108.pdfDirect OA link when available
- Concepts
-
Arabidopsis, Ubiquitin ligase, Biology, RNA splicing, Arabidopsis thaliana, Alternative splicing, Genetics, Mutant, SUMO protein, Cell biology, DNA ligase, Transgene, Abiotic stress, Gene isoform, Gene, Ubiquitin, RNATop concepts (fields/topics) attached by OpenAlex
- Cited by
-
4Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 2, 2024: 2Per-year citation counts (last 5 years)
- References (count)
-
66Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.Nevertheless, | 35 |
| abstract_inverted_index.Siz/PIAS-type | 10 |
| abstract_inverted_index.substantially | 141 |
| abstract_inverted_index.Interestingly, | 115 |
| abstract_inverted_index.characterized. | 44 |
| abstract_inverted_index.thermotolerance | 174 |
| abstract_inverted_index.nucleotide-gated | 167 |
| abstract_inverted_index.overaccumulating | 208, 234 |
| abstract_inverted_index.ubiquitin-related | 17 |
| cited_by_percentile_year.max | 97 |
| cited_by_percentile_year.min | 94 |
| corresponding_author_ids | https://openalex.org/A5009758226 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 3 |
| corresponding_institution_ids | https://openalex.org/I139264467 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/6 |
| sustainable_development_goals[0].score | 0.5 |
| sustainable_development_goals[0].display_name | Clean water and sanitation |
| citation_normalized_percentile.value | 0.78308825 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |