EEL human visual cortex 445 genes RNA spatial data Article Swipe

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Lars E. Borm , Alejandro Mossi Albiach ·

YOU? · · 2022 · Open Access · · DOI: https://doi.org/10.6084/m9.figshare.20324865.v2

Raw RNA locations of a visual cortex human brain section produced by EEL FISH for 445 genes. RNA files are in the .parquet format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html) RNA .parquet files Position and gene label for all RNA molecules. "c_px_microscope_stitched" contains X coordinates. "r_px_microscope_stitched" contians Y coordinates. The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale. "hamming_distance" is the hamming distance divided by the barcode length (16). The closer to 0 the better the barcode. Gene colors .pkl file Pickled Python dictionary with gene colors used in the paper.

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Visual Cortex

Computational Biology

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Cortex (anatomy) Gene Visual cortex Computational biology RNA Biology Cartography Computer science Neuroscience Geography Genetics

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DOI: https://doi.org/10.6084/m9.figshare.20324865.v2

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Title: EEL human visual cortex 445 genes RNA spatial data

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Language: en

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Publication year: 2022

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Publication date: 2022-01-01

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Authors: Lars E. Borm, Alejandro Mossi Albiach

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Landing page: https://doi.org/10.6084/m9.figshare.20324865.v2

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OA status: gold

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OA URL: https://doi.org/10.6084/m9.figshare.20324865.v2

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Concepts: Cortex (anatomy), Gene, Visual cortex, Computational biology, RNA, Biology, Cartography, Computer science, Neuroscience, Geography, Genetics

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