Epidemiologic Method Review at Scale: Assessing Charlson Comorbidity Versioning Using a Large Language Model Article Swipe
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1101/2025.09.23.25336010
The Charlson Comorbidity Index (CCI) is widely used in epidemiologic studies. However, many versions of the CCI have been developed since the original method was published in 1987, and it is unclear which version is used most frequently and how version utilization in research has changed over time. We present an approach using a large language model to extract data from articles by detecting which specific CCI version is employed. We analyzed 31,767 articles published since 2012 to evaluate the landscape of CCI implementation. We show that 63% of articles that cite a single method version cite only the original CCI publication, which cannot be applied in the modern real-world data era, leading to ambiguity in actual CCI implementation. More generally, this paper introduces a generalizable approach to scaling methods literature review beyond typical human-review, which we validate and demonstrate through application to the CCI.
Related Topics
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2025.09.23.25336010
- https://www.medrxiv.org/content/medrxiv/early/2025/09/25/2025.09.23.25336010.full.pdf
- OA Status
- green
- References
- 35
- OpenAlex ID
- https://openalex.org/W4414499281
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4414499281Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1101/2025.09.23.25336010Digital Object Identifier
- Title
-
Epidemiologic Method Review at Scale: Assessing Charlson Comorbidity Versioning Using a Large Language ModelWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2025Year of publication
- Publication date
-
2025-09-25Full publication date if available
- Authors
-
J. Fuchs, Craig R. Johnson, Nathan R. Foster, Peter LeeseList of authors in order
- Landing page
-
https://doi.org/10.1101/2025.09.23.25336010Publisher landing page
- PDF URL
-
https://www.medrxiv.org/content/medrxiv/early/2025/09/25/2025.09.23.25336010.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.medrxiv.org/content/medrxiv/early/2025/09/25/2025.09.23.25336010.full.pdfDirect OA link when available
- Cited by
-
0Total citation count in OpenAlex
- References (count)
-
35Number of works referenced by this work
Full payload
| id | https://openalex.org/W4414499281 |
|---|---|
| doi | https://doi.org/10.1101/2025.09.23.25336010 |
| ids.doi | https://doi.org/10.1101/2025.09.23.25336010 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/41040680 |
| ids.openalex | https://openalex.org/W4414499281 |
| fwci | 0.0 |
| type | preprint |
| title | Epidemiologic Method Review at Scale: Assessing Charlson Comorbidity Versioning Using a Large Language Model |
| biblio.issue | |
| biblio.volume | |
| biblio.last_page | |
| biblio.first_page | |
| topics[0].id | https://openalex.org/T12246 |
| topics[0].field.id | https://openalex.org/fields/27 |
| topics[0].field.display_name | Medicine |
| topics[0].score | 0.9217000007629395 |
| topics[0].domain.id | https://openalex.org/domains/4 |
| topics[0].domain.display_name | Health Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/2713 |
| topics[0].subfield.display_name | Epidemiology |
| topics[0].display_name | Chronic Disease Management Strategies |
| is_xpac | False |
| apc_list | |
| apc_paid | |
| language | en |
| locations[0].id | doi:10.1101/2025.09.23.25336010 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S4306402567 |
| locations[0].source.issn | |
| locations[0].source.type | repository |
| locations[0].source.is_oa | False |
| locations[0].source.issn_l | |
| locations[0].source.is_core | False |
| locations[0].source.is_in_doaj | False |
| locations[0].source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| locations[0].source.host_organization | https://openalex.org/I2750212522 |
| locations[0].source.host_organization_name | Cold Spring Harbor Laboratory |
| locations[0].source.host_organization_lineage | https://openalex.org/I2750212522 |
| locations[0].license | cc-by-nd |
| locations[0].pdf_url | https://www.medrxiv.org/content/medrxiv/early/2025/09/25/2025.09.23.25336010.full.pdf |
| locations[0].version | acceptedVersion |
| locations[0].raw_type | posted-content |
| locations[0].license_id | https://openalex.org/licenses/cc-by-nd |
| locations[0].is_accepted | True |
| locations[0].is_published | False |
| locations[0].raw_source_name | |
| locations[0].landing_page_url | https://doi.org/10.1101/2025.09.23.25336010 |
| locations[1].id | pmid:41040680 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | medRxiv : the preprint server for health sciences |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/41040680 |
| locations[2].id | pmh:oai:europepmc.org:11297939 |
| locations[2].is_oa | False |
| locations[2].source.id | https://openalex.org/S4306400806 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | Europe PMC (PubMed Central) |
| locations[2].source.host_organization | https://openalex.org/I1303153112 |
| locations[2].source.host_organization_name | European Bioinformatics Institute |
| locations[2].source.host_organization_lineage | https://openalex.org/I1303153112 |
| locations[2].license | |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | Text |
| locations[2].license_id | |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | |
| locations[2].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/12485990 |
| indexed_in | crossref, pubmed |
| authorships[0].author.id | https://openalex.org/A5075187480 |
| authorships[0].author.orcid | https://orcid.org/0000-0003-2775-3304 |
| authorships[0].author.display_name | J. Fuchs |
| authorships[0].countries | US |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I114027177 |
| authorships[0].affiliations[0].raw_affiliation_string | University of North Carolina at Chapel Hill |
| authorships[0].institutions[0].id | https://openalex.org/I114027177 |
| authorships[0].institutions[0].ror | https://ror.org/0130frc33 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I114027177 |
| authorships[0].institutions[0].country_code | US |
| authorships[0].institutions[0].display_name | University of North Carolina at Chapel Hill |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Josh Fuchs |
| authorships[0].is_corresponding | True |
| authorships[0].raw_affiliation_strings | University of North Carolina at Chapel Hill |
| authorships[1].author.id | https://openalex.org/A5080292912 |
| authorships[1].author.orcid | https://orcid.org/0000-0002-9511-905X |
| authorships[1].author.display_name | Craig R. Johnson |
| authorships[1].countries | US |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I114027177 |
| authorships[1].affiliations[0].raw_affiliation_string | University of North Carolina at Chapel Hill |
| authorships[1].institutions[0].id | https://openalex.org/I114027177 |
| authorships[1].institutions[0].ror | https://ror.org/0130frc33 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I114027177 |
| authorships[1].institutions[0].country_code | US |
| authorships[1].institutions[0].display_name | University of North Carolina at Chapel Hill |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Cara Johnson |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | University of North Carolina at Chapel Hill |
| authorships[2].author.id | https://openalex.org/A5008026182 |
| authorships[2].author.orcid | https://orcid.org/0000-0002-2874-1295 |
| authorships[2].author.display_name | Nathan R. Foster |
| authorships[2].countries | US |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I114027177 |
| authorships[2].affiliations[0].raw_affiliation_string | University of North Carolina at Chapel Hill |
| authorships[2].institutions[0].id | https://openalex.org/I114027177 |
| authorships[2].institutions[0].ror | https://ror.org/0130frc33 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I114027177 |
| authorships[2].institutions[0].country_code | US |
| authorships[2].institutions[0].display_name | University of North Carolina at Chapel Hill |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Nathan Foster |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | University of North Carolina at Chapel Hill |
| authorships[3].author.id | https://openalex.org/A5013789353 |
| authorships[3].author.orcid | https://orcid.org/0000-0001-9730-1675 |
| authorships[3].author.display_name | Peter Leese |
| authorships[3].countries | US |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I114027177 |
| authorships[3].affiliations[0].raw_affiliation_string | University of North Carolina at Chapel Hill |
| authorships[3].institutions[0].id | https://openalex.org/I114027177 |
| authorships[3].institutions[0].ror | https://ror.org/0130frc33 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I114027177 |
| authorships[3].institutions[0].country_code | US |
| authorships[3].institutions[0].display_name | University of North Carolina at Chapel Hill |
| authorships[3].author_position | last |
| authorships[3].raw_author_name | Peter J Leese |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | University of North Carolina at Chapel Hill |
| has_content.pdf | True |
| has_content.grobid_xml | False |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://www.medrxiv.org/content/medrxiv/early/2025/09/25/2025.09.23.25336010.full.pdf |
| open_access.oa_status | green |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | Epidemiologic Method Review at Scale: Assessing Charlson Comorbidity Versioning Using a Large Language Model |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-25T14:43:58.451035 |
| primary_topic.id | https://openalex.org/T12246 |
| primary_topic.field.id | https://openalex.org/fields/27 |
| primary_topic.field.display_name | Medicine |
| primary_topic.score | 0.9217000007629395 |
| primary_topic.domain.id | https://openalex.org/domains/4 |
| primary_topic.domain.display_name | Health Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/2713 |
| primary_topic.subfield.display_name | Epidemiology |
| primary_topic.display_name | Chronic Disease Management Strategies |
| cited_by_count | 0 |
| locations_count | 3 |
| best_oa_location.id | doi:10.1101/2025.09.23.25336010 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S4306402567 |
| best_oa_location.source.issn | |
| best_oa_location.source.type | repository |
| best_oa_location.source.is_oa | False |
| best_oa_location.source.issn_l | |
| best_oa_location.source.is_core | False |
| best_oa_location.source.is_in_doaj | False |
| best_oa_location.source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| best_oa_location.source.host_organization | https://openalex.org/I2750212522 |
| best_oa_location.source.host_organization_name | Cold Spring Harbor Laboratory |
| best_oa_location.source.host_organization_lineage | https://openalex.org/I2750212522 |
| best_oa_location.license | cc-by-nd |
| best_oa_location.pdf_url | https://www.medrxiv.org/content/medrxiv/early/2025/09/25/2025.09.23.25336010.full.pdf |
| best_oa_location.version | acceptedVersion |
| best_oa_location.raw_type | posted-content |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by-nd |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | False |
| best_oa_location.raw_source_name | |
| best_oa_location.landing_page_url | https://doi.org/10.1101/2025.09.23.25336010 |
| primary_location.id | doi:10.1101/2025.09.23.25336010 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S4306402567 |
| primary_location.source.issn | |
| primary_location.source.type | repository |
| primary_location.source.is_oa | False |
| primary_location.source.issn_l | |
| primary_location.source.is_core | False |
| primary_location.source.is_in_doaj | False |
| primary_location.source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| primary_location.source.host_organization | https://openalex.org/I2750212522 |
| primary_location.source.host_organization_name | Cold Spring Harbor Laboratory |
| primary_location.source.host_organization_lineage | https://openalex.org/I2750212522 |
| primary_location.license | cc-by-nd |
| primary_location.pdf_url | https://www.medrxiv.org/content/medrxiv/early/2025/09/25/2025.09.23.25336010.full.pdf |
| primary_location.version | acceptedVersion |
| primary_location.raw_type | posted-content |
| primary_location.license_id | https://openalex.org/licenses/cc-by-nd |
| primary_location.is_accepted | True |
| primary_location.is_published | False |
| primary_location.raw_source_name | |
| primary_location.landing_page_url | https://doi.org/10.1101/2025.09.23.25336010 |
| publication_date | 2025-09-25 |
| publication_year | 2025 |
| referenced_works | https://openalex.org/W2000445173, https://openalex.org/W2073101005, https://openalex.org/W2217199961, https://openalex.org/W2622468719, https://openalex.org/W2980357581, https://openalex.org/W2129168200, https://openalex.org/W2011966376, https://openalex.org/W1998503604, https://openalex.org/W2165037395, https://openalex.org/W2061326496, https://openalex.org/W2121656227, https://openalex.org/W2154692607, https://openalex.org/W1917915479, https://openalex.org/W2157358083, https://openalex.org/W4205594133, https://openalex.org/W2066059923, https://openalex.org/W3196952144, https://openalex.org/W4223480060, https://openalex.org/W2523785361, https://openalex.org/W4281476575, https://openalex.org/W4389686182, https://openalex.org/W4391836235, https://openalex.org/W4392002118, https://openalex.org/W4406233449, https://openalex.org/W2755950973, https://openalex.org/W2114850508, https://openalex.org/W4388928506, https://openalex.org/W3004877964, https://openalex.org/W4385569970, https://openalex.org/W4385567149, https://openalex.org/W3035965352, https://openalex.org/W2342249984, https://openalex.org/W6912771027, https://openalex.org/W2129997990, https://openalex.org/W4210808425 |
| referenced_works_count | 35 |
| abstract_inverted_index.a | 54, 93, 125 |
| abstract_inverted_index.We | 49, 71, 85 |
| abstract_inverted_index.an | 51 |
| abstract_inverted_index.be | 105 |
| abstract_inverted_index.by | 63 |
| abstract_inverted_index.in | 9, 27, 43, 107, 116 |
| abstract_inverted_index.is | 6, 31, 35, 69 |
| abstract_inverted_index.it | 30 |
| abstract_inverted_index.of | 15, 82, 89 |
| abstract_inverted_index.to | 58, 78, 114, 128, 143 |
| abstract_inverted_index.we | 137 |
| abstract_inverted_index.63% | 88 |
| abstract_inverted_index.CCI | 17, 67, 83, 101, 118 |
| abstract_inverted_index.The | 1 |
| abstract_inverted_index.and | 29, 39, 139 |
| abstract_inverted_index.has | 45 |
| abstract_inverted_index.how | 40 |
| abstract_inverted_index.the | 16, 22, 80, 99, 108, 144 |
| abstract_inverted_index.was | 25 |
| abstract_inverted_index.2012 | 77 |
| abstract_inverted_index.CCI. | 145 |
| abstract_inverted_index.More | 120 |
| abstract_inverted_index.been | 19 |
| abstract_inverted_index.cite | 92, 97 |
| abstract_inverted_index.data | 60, 111 |
| abstract_inverted_index.era, | 112 |
| abstract_inverted_index.from | 61 |
| abstract_inverted_index.have | 18 |
| abstract_inverted_index.many | 13 |
| abstract_inverted_index.most | 37 |
| abstract_inverted_index.only | 98 |
| abstract_inverted_index.over | 47 |
| abstract_inverted_index.show | 86 |
| abstract_inverted_index.that | 87, 91 |
| abstract_inverted_index.this | 122 |
| abstract_inverted_index.used | 8, 36 |
| abstract_inverted_index.(CCI) | 5 |
| abstract_inverted_index.1987, | 28 |
| abstract_inverted_index.Index | 4 |
| abstract_inverted_index.large | 55 |
| abstract_inverted_index.model | 57 |
| abstract_inverted_index.paper | 123 |
| abstract_inverted_index.since | 21, 76 |
| abstract_inverted_index.time. | 48 |
| abstract_inverted_index.using | 53 |
| abstract_inverted_index.which | 33, 65, 103, 136 |
| abstract_inverted_index.31,767 | 73 |
| abstract_inverted_index.actual | 117 |
| abstract_inverted_index.beyond | 133 |
| abstract_inverted_index.cannot | 104 |
| abstract_inverted_index.method | 24, 95 |
| abstract_inverted_index.modern | 109 |
| abstract_inverted_index.review | 132 |
| abstract_inverted_index.single | 94 |
| abstract_inverted_index.widely | 7 |
| abstract_inverted_index.applied | 106 |
| abstract_inverted_index.changed | 46 |
| abstract_inverted_index.extract | 59 |
| abstract_inverted_index.leading | 113 |
| abstract_inverted_index.methods | 130 |
| abstract_inverted_index.present | 50 |
| abstract_inverted_index.scaling | 129 |
| abstract_inverted_index.through | 141 |
| abstract_inverted_index.typical | 134 |
| abstract_inverted_index.unclear | 32 |
| abstract_inverted_index.version | 34, 41, 68, 96 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.Charlson | 2 |
| abstract_inverted_index.However, | 12 |
| abstract_inverted_index.analyzed | 72 |
| abstract_inverted_index.approach | 52, 127 |
| abstract_inverted_index.articles | 62, 74, 90 |
| abstract_inverted_index.evaluate | 79 |
| abstract_inverted_index.language | 56 |
| abstract_inverted_index.original | 23, 100 |
| abstract_inverted_index.research | 44 |
| abstract_inverted_index.specific | 66 |
| abstract_inverted_index.studies. | 11 |
| abstract_inverted_index.validate | 138 |
| abstract_inverted_index.versions | 14 |
| abstract_inverted_index.ambiguity | 115 |
| abstract_inverted_index.detecting | 64 |
| abstract_inverted_index.developed | 20 |
| abstract_inverted_index.employed. | 70 |
| abstract_inverted_index.landscape | 81 |
| abstract_inverted_index.published | 26, 75 |
| abstract_inverted_index.frequently | 38 |
| abstract_inverted_index.generally, | 121 |
| abstract_inverted_index.introduces | 124 |
| abstract_inverted_index.literature | 131 |
| abstract_inverted_index.real-world | 110 |
| abstract_inverted_index.Comorbidity | 3 |
| abstract_inverted_index.application | 142 |
| abstract_inverted_index.demonstrate | 140 |
| abstract_inverted_index.utilization | 42 |
| abstract_inverted_index.publication, | 102 |
| abstract_inverted_index.epidemiologic | 10 |
| abstract_inverted_index.generalizable | 126 |
| abstract_inverted_index.human-review, | 135 |
| abstract_inverted_index.implementation. | 84, 119 |
| cited_by_percentile_year | |
| corresponding_author_ids | https://openalex.org/A5075187480 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 4 |
| corresponding_institution_ids | https://openalex.org/I114027177 |
| citation_normalized_percentile.value | 0.55196184 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |