Epigenetic then genetic variations underpin rapid adaptation of oyster populations (Crassostrea gigas) to Pacific Oyster Mortality Syndrome (POMS) Article Swipe
Janan Gawra
,
A. Valdivieso
,
Fabrice Roux
,
Martin Laporte
,
Julien de Lorgeril
,
Yannick Gueguen
,
Mathilde Saccas
,
Jean-Michel Escoubas
,
Caroline Montagnani
,
Delphine Destoumieux‐Garzón
,
Franck Lagarde
,
Marc Leroy
,
Philippe Haffner
,
Bruno Petton
,
Céline Cosseau
,
Benjamín Morga
,
Lionel Dégremont
,
Guillaume Mitta
,
Christoph Grunau
,
Jérémie Vidal‐Dupiol
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1101/2023.03.09.531494
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1101/2023.03.09.531494
Disease emergence is accelerating in response to human activity-induced global changes. Understanding the mechanisms by which host populations can rapidly adapt to this threat will be crucial for developing future management practices. Pacific Oyster Mortality Syndrome (POMS) imposes a substantial and recurrent selective pressure on oyster populations ( Crassostrea gigas) . Rapid adaptation to this disease may arise through both genetic and epigenetic mechanisms. In this study, we used a combination of whole exome capture of bisulfite-converted DNA, next-generation sequencing, and (epi)genome-wide association mapping, to show that natural oyster populations differentially exposed to POMS displayed signatures of selection both in their genome (single nucleotide polymorphisms) and epigenome (CG-context DNA methylation). Consistent with higher resistance to POMS, the genes targeted by genetic and epigenetic variations were mainly related to host immunity. By combining correlation analyses, DNA methylation quantitative trait loci, and variance partitioning, we revealed that a third of the observed phenotypic variation was explained by interactions between the genetic sequence and epigenetic information, ∼14% by the genetic sequence, and up to 25% by the epigenome alone. Thus, as well as genetic adaptation, epigenetic mechanisms governing immune responses contribute significantly to the rapid adaptation of hosts to emerging infectious diseases.
Related Topics
Concepts
Biology
Epigenetics
Pacific oyster
Epigenome
Genetics
DNA methylation
Genetic variation
Oyster
Crassostrea
Adaptation (eye)
Evolutionary biology
Context (archaeology)
Gene
Ecology
Gene expression
Neuroscience
Paleontology
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2023.03.09.531494
- https://www.biorxiv.org/content/biorxiv/early/2023/03/12/2023.03.09.531494.full.pdf
- OA Status
- green
- References
- 59
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4324085417
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4324085417Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1101/2023.03.09.531494Digital Object Identifier
- Title
-
Epigenetic then genetic variations underpin rapid adaptation of oyster populations (Crassostrea gigas) to Pacific Oyster Mortality Syndrome (POMS)Work title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2023Year of publication
- Publication date
-
2023-03-12Full publication date if available
- Authors
-
Janan Gawra, A. Valdivieso, Fabrice Roux, Martin Laporte, Julien de Lorgeril, Yannick Gueguen, Mathilde Saccas, Jean-Michel Escoubas, Caroline Montagnani, Delphine Destoumieux‐Garzón, Franck Lagarde, Marc Leroy, Philippe Haffner, Bruno Petton, Céline Cosseau, Benjamín Morga, Lionel Dégremont, Guillaume Mitta, Christoph Grunau, Jérémie Vidal‐DupiolList of authors in order
- Landing page
-
https://doi.org/10.1101/2023.03.09.531494Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2023/03/12/2023.03.09.531494.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2023/03/12/2023.03.09.531494.full.pdfDirect OA link when available
- Concepts
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Biology, Epigenetics, Pacific oyster, Epigenome, Genetics, DNA methylation, Genetic variation, Oyster, Crassostrea, Adaptation (eye), Evolutionary biology, Context (archaeology), Gene, Ecology, Gene expression, Neuroscience, PaleontologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
- References (count)
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59Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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