Evaluation of a TaqMan Array Card for Detection of Central Nervous System Infections Article Swipe
Clayton Onyango
,
Vladimir N. Loparev
,
Shirley Lidechi
,
Vinod Bhullar
,
D. Scott Schmid
,
Kay Radford
,
Michael K. Lo
,
Paul A. Rota
,
Barbara W. Johnson
,
Jorge L. Muñoz
,
Martina Oneko
,
Deron C. Burton
,
Carolyn M. Black
,
John Neatherlin
,
Joel M. Montgomery
,
Barry S. Fields
·
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.1128/jcm.02469-16
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.1128/jcm.02469-16
Infections of the central nervous system (CNS) are often acute, with significant morbidity and mortality. Routine diagnosis of such infections is limited in developing countries and requires modern equipment in advanced laboratories that may be unavailable to a number of patients in sub-Saharan Africa. We developed a TaqMan array card (TAC) that detects multiple pathogens simultaneously from cerebrospinal fluid. The 21-pathogen CNS multiple-pathogen TAC (CNS-TAC) assay includes two parasites ( Balamuthia mandrillaris and Acanthamoeba ), six bacterial pathogens ( Streptococcus pneumonia e, Haemophilus influenzae , Neisseria meningitidis , Mycoplasma pneumoniae , Mycobacterium tuberculosis , and Bartonella ), and 13 viruses (parechovirus, dengue virus, Nipah virus, varicella-zoster virus, mumps virus, measles virus, lyssavirus, herpes simplex viruses 1 and 2, Epstein-Barr virus, enterovirus, cytomegalovirus, and chikungunya virus). The card also includes human RNase P as a nucleic acid extraction control and an internal manufacturer control, GAPDH (glyceraldehyde-3-phosphate dehydrogenase). This CNS-TAC assay can test up to eight samples for all 21 agents within 2.5 h following nucleic acid extraction. The assay was validated for linearity, limit of detection, sensitivity, and specificity by using either live viruses (dengue, mumps, and measles viruses) or nucleic acid material (Nipah and chikungunya viruses). Of 120 samples tested by individual real-time PCR, 35 were positive for eight different targets, whereas the CNS-TAC assay detected 37 positive samples across nine different targets. The CNS-TAC assays showed 85.6% sensitivity and 96.7% specificity. Therefore, the CNS-TAC assay may be useful for outbreak investigation and surveillance of suspected neurological disease.
Related Topics
Concepts
Virology
Biology
Chikungunya
Measles virus
Microbiology
Dengue fever
Herpes simplex virus
Virus
Mycoplasma pneumoniae
Varicella zoster virus
Morbillivirus
Viral disease
Paramyxoviridae
Measles
Pneumonia
Medicine
Vaccination
Internal medicine
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1128/jcm.02469-16
- https://jcm.asm.org/content/jcm/55/7/2035.full.pdf
- OA Status
- bronze
- Cited By
- 31
- References
- 45
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2680254013
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W2680254013Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1128/jcm.02469-16Digital Object Identifier
- Title
-
Evaluation of a TaqMan Array Card for Detection of Central Nervous System InfectionsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2017Year of publication
- Publication date
-
2017-04-13Full publication date if available
- Authors
-
Clayton Onyango, Vladimir N. Loparev, Shirley Lidechi, Vinod Bhullar, D. Scott Schmid, Kay Radford, Michael K. Lo, Paul A. Rota, Barbara W. Johnson, Jorge L. Muñoz, Martina Oneko, Deron C. Burton, Carolyn M. Black, John Neatherlin, Joel M. Montgomery, Barry S. FieldsList of authors in order
- Landing page
-
https://doi.org/10.1128/jcm.02469-16Publisher landing page
- PDF URL
-
https://jcm.asm.org/content/jcm/55/7/2035.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
bronzeOpen access status per OpenAlex
- OA URL
-
https://jcm.asm.org/content/jcm/55/7/2035.full.pdfDirect OA link when available
- Concepts
-
Virology, Biology, Chikungunya, Measles virus, Microbiology, Dengue fever, Herpes simplex virus, Virus, Mycoplasma pneumoniae, Varicella zoster virus, Morbillivirus, Viral disease, Paramyxoviridae, Measles, Pneumonia, Medicine, Vaccination, Internal medicineTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
31Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 3, 2024: 4, 2023: 5, 2022: 2, 2021: 1Per-year citation counts (last 5 years)
- References (count)
-
45Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.extraction. | 166 |
| abstract_inverted_index.lyssavirus, | 112 |
| abstract_inverted_index.sensitivity | 229 |
| abstract_inverted_index.significant | 12 |
| abstract_inverted_index.specificity | 178 |
| abstract_inverted_index.sub-Saharan | 43 |
| abstract_inverted_index.unavailable | 36 |
| abstract_inverted_index.Acanthamoeba | 74 |
| abstract_inverted_index.Epstein-Barr | 119 |
| abstract_inverted_index.enterovirus, | 121 |
| abstract_inverted_index.laboratories | 32 |
| abstract_inverted_index.mandrillaris | 72 |
| abstract_inverted_index.manufacturer | 142 |
| abstract_inverted_index.meningitidis | 87 |
| abstract_inverted_index.neurological | 247 |
| abstract_inverted_index.sensitivity, | 176 |
| abstract_inverted_index.specificity. | 232 |
| abstract_inverted_index.surveillance | 244 |
| abstract_inverted_index.tuberculosis | 93 |
| abstract_inverted_index.Mycobacterium | 92 |
| abstract_inverted_index.Streptococcus | 80 |
| abstract_inverted_index.cerebrospinal | 58 |
| abstract_inverted_index.investigation | 242 |
| abstract_inverted_index.(parechovirus, | 101 |
| abstract_inverted_index.simultaneously | 56 |
| abstract_inverted_index.dehydrogenase). | 146 |
| abstract_inverted_index.cytomegalovirus, | 122 |
| abstract_inverted_index.varicella-zoster | 106 |
| abstract_inverted_index.multiple-pathogen | 63 |
| abstract_inverted_index.(glyceraldehyde-3-phosphate | 145 |
| cited_by_percentile_year.max | 99 |
| cited_by_percentile_year.min | 89 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 16 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/17 |
| sustainable_development_goals[0].score | 0.41999998688697815 |
| sustainable_development_goals[0].display_name | Partnerships for the goals |
| citation_normalized_percentile.value | 0.89270179 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |