Expression profiling of DUF599 genes revealed their role in regulating abiotic stress response in solanum tuberosum Article Swipe
Madiha Zaynab
,
Hamed A. Ghramh
,
Yasir Sharif
,
Sajid Fiaz
,
Rashid Al‐Yahyai
,
Maryam A. Alahdal
,
Sameer H. Qari
,
Kamel Hessini
,
Xiazi Huang
,
Shuangfei Li
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1016/j.jksus.2022.102368
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1016/j.jksus.2022.102368
The proteins containing the domain of unknown functions (DUFs) have significant roles in stress response and the growth of plants. A comprehensive genome-wide analysis and expression profiling of DUF599 was conducted to identify their roles in potato growth and response to stressed conditions. A total of nine DUF599 genes were identified, located on five chromosomes in the potato genome. The phylogenetic analysis divided StDUF599 genes into three groups in accordance with gene conserved motifs and gene structure distribution patterns. The StDUF599 promoters comprised several cis-acting factors responsive to plant hormones and abiotic stresses. The present study revealed that StDUF599 genes also possessed MBS, LTR, ABRE, and anaerobic induction responsive elements, indicating their importance in coping with abiotic stresses. StDUF599 genes were the target of several families of micro-RNAs also identified in this study. Purifying selection pressures lead to the duplication of the StDUF599 genes. Expression analysis of StDUF599-6 and StDUF599-9 in various tissues illustrated their vital role in developmental processes. It was found that StDUF599-7 and StDUF599-9 were highly expressed against heat and salt stresses. Expression profiling revealed that the StDUF599-8 gene has a significant role against GA3 and IAA. Lastly, this article forecasted that the DUF599 genes could enhance plant tolerance against several abiotic stresses.
Related Topics
Concepts
Biology
Abiotic stress
Gene
Abiotic component
Gene expression profiling
Genetics
Genome
Gene family
Solanum tuberosum
Gene expression
Botany
Ecology
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1016/j.jksus.2022.102368
- OA Status
- gold
- Cited By
- 4
- References
- 41
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4304687602
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4304687602Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1016/j.jksus.2022.102368Digital Object Identifier
- Title
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Expression profiling of DUF599 genes revealed their role in regulating abiotic stress response in solanum tuberosumWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-10-12Full publication date if available
- Authors
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Madiha Zaynab, Hamed A. Ghramh, Yasir Sharif, Sajid Fiaz, Rashid Al‐Yahyai, Maryam A. Alahdal, Sameer H. Qari, Kamel Hessini, Xiazi Huang, Shuangfei LiList of authors in order
- Landing page
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https://doi.org/10.1016/j.jksus.2022.102368Publisher landing page
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://doi.org/10.1016/j.jksus.2022.102368Direct OA link when available
- Concepts
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Biology, Abiotic stress, Gene, Abiotic component, Gene expression profiling, Genetics, Genome, Gene family, Solanum tuberosum, Gene expression, Botany, EcologyTop concepts (fields/topics) attached by OpenAlex
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4Total citation count in OpenAlex
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2025: 1, 2024: 2, 2023: 1Per-year citation counts (last 5 years)
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41Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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